38 Open source projects that are alternatives of or similar to chronological-map-phenotypes

Mining Minds is a collection of services, tools and techniques working collaboratively to investigate on human’s daily routines to provide a personalized well-being and health-care support

A suite of tools for epidemiology in Python.

A library and microservice implementing the health and care terminology SNOMED CT with support for cross-maps, inference, fast full-text search, autocompletion, compositional grammar and the expression constraint language.

COVID-19 App

Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.

This is an Covid-19 tracker especially made for India

An agent-based epidemiology simulation framework built in Rust

Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3

Analysis with Covid-19 data

Agent-based simulation model for COVID-19 spread in society and patient outcomes

R Package for individual based epidemiological models

EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."

COVID-19 Pandemic Data R Package

A framework for data-driven stochastic disease spread simulations

COVID-10 Analysis

Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.

Source code for the EpiEstim app.

Pyro models of SARS-CoV-2 variants

📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.

A magyarországi koronavírus járvány valós idejű, kvantitatív epidemiológiája.

Build Petri net models compositionally

🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19

June is a framework for agent based modelling in an epidemiological and geographical context.

Portal de dados do Projeto Alerta Dengue

Network Models of HIV Transmission Dynamics among MSM and Heterosexuals

Domain-Specific Modeling for Epidemiology

Bayesian spatial analysis

COVID-19 social distancing simulator

SEIR+ model

Explore the Plant Trait Ontology on the Planteome site.

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

Research Data Management Platform (RDMP) is an open source application for the loading,linking,anonymisation and extraction of datasets stored in relational databases.

Easier CUSUM control charts. Returns simple CUSUM statistics, CUSUMs with control limit calculations, and function to generate faceted CUSUM Control Charts

A minimal meditation app made with Flutter

The most boring open source you've ever seen ....

An open source multi tenant cloud platform for small scale clinics