143 Open source projects that are alternatives of or similar to Containerit

Source code for the CERN Analysis Preservation portal

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Short course on reproducible science: what, why, how

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Fully reproducible, open source scientific articles in LaTeX.

Everware is about re-useable science, it allows people to jump right in to your research code.

rrtools: Tools for Writing Reproducible Research in R

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

🔬 Empirical CLI

Software Papers as Software Modules: Towards a Culture of Reusable Results

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

🐳 Containerize R Markdown documents for continuous reproducibility

A curated list of reproducible research case studies, projects, tutorials, and media

A DSL for data-driven computational pipelines

Papers with code for single cell related papers

Examples and demos for ReproZip

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Future Gadget Machine

Future Gadget Laboratory

Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

R interface to the Open Science Framework (OSF)

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Express parametrable, composable and portable data pipelines

project page for creating a guide to reproducible research

Example workflows for the drake R package

Avalanche: a End-to-End Library for Continual Learning.

Collection of popular and reproducible image denoising works.

SEER, reimplemented in python 🐍🔮

Cookbook examples for the Insight Toolkit documented with Sphinx

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

RNA-seq workflow using STAR and DESeq2

Website for NA-MIC Project Weeks

Curated set of transformers that make your work with steppy faster and more effective 🔭

Shared artifacts in the Collective Knowledge Format as a proof-of-concept to reproduce our recent Collective Mind- and Collective Knowledge-related papers

MEX Vocabulary: a lightweight machine learning interchange format

FMA: A Dataset For Music Analysis

a research software; a fun way of storing files & folders on your local disk drive; tagging

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Live code in Pandoc Markdown

A Collection of Variational Autoencoders (VAE) in PyTorch.

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

Scientific reports/literate programming for Julia

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

A research tool for the Iterated Prisoner's Dilemma

Presentation-Ready Data Summary and Analytic Result Tables

An R-focused pipeline toolkit for reproducibility and high-performance computing

🚀 Build and manage real-life data science projects with ease!

Generate custom Docker and Singularity images, and minimize existing containers

Workflow Description Language - Specification and Implementations

A platform for end-to-end development of machine learning solutions in biomedical imaging