Qualia2.0Qualia is a deep learning framework deeply integrated with automatic differentiation and dynamic graphing with CUDA acceleration. Qualia was built from scratch.
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Genannsimple neural network library in ANSI C
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Quota AlignmentGuided synteny alignment between duplicated genomes (within specified quota constraint)
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AlignmentdurationLyrics-to-audio-alignement system. Based on Machine Learning Algorithms: Hidden Markov Models with Viterbi forced alignment. The alignment is explicitly aware of durations of musical notes. The phonetic model are classified with MLP Deep Neural Network.
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Lstm Context EmbeddingsAugmenting word embeddings with their surrounding context using bidirectional RNN
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Machine Learning From ScratchSuccinct Machine Learning algorithm implementations from scratch in Python, solving real-world problems (Notebooks and Book). Examples of Logistic Regression, Linear Regression, Decision Trees, K-means clustering, Sentiment Analysis, Recommender Systems, Neural Networks and Reinforcement Learning.
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Cyclegan QpOfficial PyTorch implementation of "Artist Style Transfer Via Quadratic Potential"
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DapsDenoising Autoencoders for Phenotype Stratification
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GenozipCompressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
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CgnnCrystal Graph Neural Networks
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GraspCode for "Picking Winning Tickets Before Training by Preserving Gradient Flow" https://openreview.net/pdf?id=SkgsACVKPH
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SnsAnalysis pipelines for sequencing data
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Bidaf KerasBidirectional Attention Flow for Machine Comprehension implemented in Keras 2
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Jigvigv.js server and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
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Dm HaikuJAX-based neural network library
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JonsnowApp Store/Google Play review watcher, deliver new reviews to slack channel
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RadiatorRADseq Data Exploration, Manipulation and Visualization using R
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DpwaDistributed Learning by Pair-Wise Averaging
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Dbn CudaGPU accelerated Deep Belief Network
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Keras GanKeras implementations of Generative Adversarial Networks.
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Teacher Student TrainingThis repository stores the files used for my summer internship's work on "teacher-student learning", an experimental method for training deep neural networks using a trained teacher model.
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DeepbrainDeep Learning tools for brain medical images
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DramDistilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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MixomicsDevelopment repository for the Bioconductor package 'mixOmics '
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TensorhubTensorHub is a library built on top of TensorFlow 2.0 to provide simple, modular and repeatable abstractions to accelerate deep learning research.
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GosomSelf-organizing maps in Go
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MujocounityReproducing MuJoCo benchmarks in a modern, commercial game /physics engine (Unity + PhysX).
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Applying eannsA 2D Unity simulation in which cars learn to navigate themselves through different courses. The cars are steered by a feedforward neural network. The weights of the network are trained using a modified genetic algorithm.
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Ml In TfGet started with Machine Learning in TensorFlow with a selection of good reads and implemented examples!
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Fft Conv PytorchImplementation of 1D, 2D, and 3D FFT convolutions in PyTorch. Much faster than direct convolutions for large kernel sizes.
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Advis.js[Tensorflow.js] AdVis: Exploring real-time Adversarial Attacks in the browser with Fast Gradient Sign Method.
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Convisualize nbVisualisations for Convolutional Neural Networks in Pytorch
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Github Review FilterChrome extension to filter files in GitHub code review using glob
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Dna NnModel and predict short DNA sequence features with neural networks
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YannThis toolbox is support material for the book on CNN (http://www.convolution.network).
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Meme GeneratorMemeGen is a web application where the user gives an image as input and our tool generates a meme at one click for the user.
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GatkOfficial code repository for GATK versions 4 and up
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MishOfficial Repsoitory for "Mish: A Self Regularized Non-Monotonic Neural Activation Function" [BMVC 2020]
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TensoranfisA Tensorflow implementation of the Adaptive Neuro-Based Fuzzy Inference System (ANFIS)
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FlynetOfficial PyTorch implementation of paper "A Hybrid Compact Neural Architecture for Visual Place Recognition" by M. Chancán (RA-L & ICRA 2020) https://doi.org/10.1109/LRA.2020.2967324
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AorunDeep Learning over PyTorch
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BwaBurrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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Deep Kernel GpDeep Kernel Learning. Gaussian Process Regression where the input is a neural network mapping of x that maximizes the marginal likelihood
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AioliFramework for building fast genomics web tools with WebAssembly and WebWorkers
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SpeedrunResearch code need not be ugly.
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Ai PlatformAn open-source platform for automating tasks using machine learning models
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StudyAlgorithm / Book Reviews / Interview / ETC
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Mckinsey Smartcities Traffic PredictionAdventure into using multi attention recurrent neural networks for time-series (city traffic) for the 2017-11-18 McKinsey IronMan (24h non-stop) prediction challenge
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