All Projects → ecell4_base → Similar Projects or Alternatives

25 Open source projects that are alternatives of or similar to ecell4_base

cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Stars: ✭ 30 (-50.82%)
Mutual labels:  systems-biology
chise.js
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Stars: ✭ 15 (-75.41%)
Mutual labels:  systems-biology
doctoral-thesis
📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
Stars: ✭ 26 (-57.38%)
Mutual labels:  systems-biology
simon-frontend
💹 SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform 💻
Stars: ✭ 114 (+86.89%)
Mutual labels:  systems-biology
parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Stars: ✭ 16 (-73.77%)
Mutual labels:  systems-biology
CellMLToolkit.jl
CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
Stars: ✭ 50 (-18.03%)
Mutual labels:  systems-biology
dingo
A python library for metabolic networks sampling and analysis
Stars: ✭ 29 (-52.46%)
Mutual labels:  systems-biology
stochpy
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
Stars: ✭ 36 (-40.98%)
Mutual labels:  systems-biology
CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Stars: ✭ 27 (-55.74%)
Mutual labels:  systems-biology
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae
Stars: ✭ 72 (+18.03%)
Mutual labels:  systems-biology
smfsb
Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
Stars: ✭ 27 (-55.74%)
Mutual labels:  systems-biology
sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
Stars: ✭ 21 (-65.57%)
Mutual labels:  systems-biology
pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Stars: ✭ 47 (-22.95%)
Mutual labels:  systems-biology
findr
Fast Inference of Networks from Directed Regulations
Stars: ✭ 19 (-68.85%)
Mutual labels:  systems-biology
pyPESTO
python Parameter EStimation TOolbox
Stars: ✭ 93 (+52.46%)
Mutual labels:  systems-biology
shiny-iatlas
An interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (-29.51%)
Mutual labels:  systems-biology
MomentClosure.jl
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
Stars: ✭ 34 (-44.26%)
Mutual labels:  systems-biology
biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Stars: ✭ 96 (+57.38%)
Mutual labels:  systems-biology
DEcode
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
Stars: ✭ 16 (-73.77%)
Mutual labels:  systems-biology
pybel
🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)
Stars: ✭ 99 (+62.3%)
Mutual labels:  systems-biology
SBMLToolkit.jl
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
Stars: ✭ 25 (-59.02%)
Mutual labels:  systems-biology
colomoto-docker
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Stars: ✭ 15 (-75.41%)
Mutual labels:  systems-biology
workshop omics integration
Workshop in omics integration and systems biology
Stars: ✭ 32 (-47.54%)
Mutual labels:  systems-biology
newt
A web application to visualize and edit pathway models
Stars: ✭ 46 (-24.59%)
Mutual labels:  systems-biology
EscherConverter
A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.
Stars: ✭ 14 (-77.05%)
Mutual labels:  systems-biology
1-25 of 25 similar projects