individualR Package for individual based epidemiological models
Stars: ✭ 20 (+0%)
reina-modelAgent-based simulation model for COVID-19 spread in society and patient outcomes
Stars: ✭ 30 (+50%)
epirustAn agent-based epidemiology simulation framework built in Rust
Stars: ✭ 76 (+280%)
SimInfA framework for data-driven stochastic disease spread simulations
Stars: ✭ 21 (+5%)
kendrickDomain-Specific Modeling for Epidemiology
Stars: ✭ 43 (+115%)
spatial-microsim-bookCode, data and prose of the book: Spatial Microsimulation with R
Stars: ✭ 98 (+390%)
OpenABLA domain-specific language for parallel and distributed agent-based simulations.
Stars: ✭ 24 (+20%)
covid19-analyticsAnalysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.
Stars: ✭ 22 (+10%)
parasolA network graph exploration tool
Stars: ✭ 57 (+185%)
EpiTatorEpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Stars: ✭ 38 (+90%)
evoplexEvoplex is a fast, robust and extensible platform for developing agent-based models and multi-agent systems on networks. It's available for Windows, Linux and macOS.
Stars: ✭ 98 (+390%)
DiffOpt.jlDifferentiating convex optimization programs w.r.t. program parameters
Stars: ✭ 106 (+430%)
MesaFireEvacuationAgent Based Fire Evacuation Model built using Project Mesa
Stars: ✭ 21 (+5%)
nlrxnlrx NetLogo R
Stars: ✭ 66 (+230%)
COVID-Resource-Allocation-SimulatorAgent-based modelling for resource allocation in viral crises to investigate resource allocation and policy interventions with respect to transmission rate.
Stars: ✭ 61 (+205%)
DiagrammerGraph and network visualization using tabular data in R.
Stars: ✭ 1,497 (+7385%)
Python-for-EpidemiologistsTutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
Stars: ✭ 107 (+435%)
PM COVIDPublic Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."
Stars: ✭ 97 (+385%)
jungrapht-visualizationvisualization and sample code from Java Universal Network Graph ported to use JGraphT models and algorithms
Stars: ✭ 37 (+85%)
data2019nCoVCOVID-19 Pandemic Data R Package
Stars: ✭ 40 (+100%)
listRepository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
Stars: ✭ 31 (+55%)
episuiteA suite of tools for epidemiology in Python.
Stars: ✭ 25 (+25%)
pyro-covPyro models of SARS-CoV-2 variants
Stars: ✭ 39 (+95%)
js-simulatorGeneral-purpose discrete-event multiagent simulation library for agent-based modelling and simulation
Stars: ✭ 52 (+160%)
yallaSpheroid models of morphogenesis for the GPU.
Stars: ✭ 30 (+50%)
terrameTerraME is a programming environment for spatial dynamical modelling
Stars: ✭ 33 (+65%)
musicntwrkNetwork Analysis of Generalized Musical Spaces
Stars: ✭ 37 (+85%)
python-agentspeakA Python-based interpreter for the agent-oriented programming language JASON
Stars: ✭ 32 (+60%)
Whatsapp-NetGenerate a network graph of connections from your WhatsApp groups data
Stars: ✭ 75 (+275%)
nlexperiment🐟 R package for NetLogo experiments http://bergant.github.io/nlexperiment/
Stars: ✭ 16 (-20%)
vosonSMLR package for collecting social media data and creating networks for analysis.
Stars: ✭ 65 (+225%)
LifeBrushA toolkit for painting agent-based mesoscale molecular simulations and illustrations.
Stars: ✭ 38 (+90%)
abcFinanceAgent-based computational Finance
Stars: ✭ 27 (+35%)
AppCOVID-19 App
Stars: ✭ 2,079 (+10295%)
cultural evolution ABM tutorialThis tutorial shows how to create very simple simulation or agent-based models of cultural evolution in R
Stars: ✭ 82 (+310%)
Covid-19-TrackerThis is an Covid-19 tracker especially made for India
Stars: ✭ 39 (+95%)
mitre-visualizer🧬 Mitre Interactive Network Graph (APTs, Malware, Tools, Techniques & Tactics)
Stars: ✭ 49 (+145%)
geostanBayesian spatial analysis
Stars: ✭ 40 (+100%)
MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (+30%)
chronological-map-phenotypesMachine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
Stars: ✭ 38 (+90%)
COVID19MagyarEpiA magyarországi koronavírus járvány valós idejű, kvantitatív epidemiológiája.
Stars: ✭ 19 (-5%)
EpiEstimAppSource code for the EpiEstim app.
Stars: ✭ 28 (+40%)
floccAgent-based modeling in JavaScript in the browser or on the server.
Stars: ✭ 26 (+30%)
cli-corona📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.
Stars: ✭ 14 (-30%)
intro-to-abmIntroduction to Agent Based Modeling *updated version coming soon*
Stars: ✭ 19 (-5%)
housing-modelAgent-based model of the UK housing market.
Stars: ✭ 29 (+45%)
farolcovid🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19
Stars: ✭ 49 (+145%)
JUNEJune is a framework for agent based modelling in an epidemiological and geographical context.
Stars: ✭ 28 (+40%)
agentpyAgentPy is an open-source framework for the development and analysis of agent-based models in Python.
Stars: ✭ 236 (+1080%)
human-memoryCourse materials for Dartmouth course: Human Memory (PSYC 51.09)
Stars: ✭ 239 (+1095%)
FAVITESFAVITES (FrAmework for VIral Transmission and Evolution Simulation)
Stars: ✭ 33 (+65%)
ESLThe Economic Simulation Library provides an extensive collection of tools to develop, test, analyse and calibrate economic and financial agent-based models. The library is designed to take advantage of different computer architectures. In order to facilitate rapid iteration during model development the library can use parallel computation. Econ…
Stars: ✭ 36 (+80%)