32 Open source projects that are alternatives of or similar to EVcouplings

web-based protein structure viewer and analysis tool interactively or in batch mode

Protein cavity identification and automatic subpocket decomposition

Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.

Fast and flexible ORF finder

VSCode Extension for interactively visualising protein structure data in the editor

ProteinGCN: Protein model quality assessment using Graph Convolutional Networks

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Cancer-dedicated gene set interpretation

Protein structure comparison tools such as SSAP and SNAP

minimalistic nucleic acid folding

Modelling the Language of Life - Deep Learning Protein Sequences

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Guided Conditional Wasserstein GAN for De Novo Protein Design

Neural Networks for Protein Sequence Alignment

Protein Secondary Structure predictor using Convolutional Neural Networks

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

📚 🔬 PIA - Protein Inference Algorithms

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

Differentiable molecular simulation of proteins with a coarse-grained potential

View proteins and trajectories in the terminal

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

A dependency-free cross-platform swiss army knife for PDB files.

Graph Network for protein-protein interface

A suite of tools to explore protein structures with Protein Blocks 🐍

waka waka

Official git repository for Biopython (originally converted from CVS)

🧬 An R package for visualizing molecular data in 3D

A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.