143 Open source projects that are alternatives of or similar to Fglab

Everware is about re-useable science, it allows people to jump right in to your research code.

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

rrtools: Tools for Writing Reproducible Research in R

🔬 Empirical CLI

Fully reproducible, open source scientific articles in LaTeX.

Future Gadget Machine

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A curated list of reproducible research case studies, projects, tutorials, and media

Reproducible Data Science in Python (SciPy 2019 Tutorial)

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

Examples and demos for ReproZip

Package an R workspace and all dependencies as a Docker container

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

A DSL for data-driven computational pipelines

Source code for the CERN Analysis Preservation portal

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Papers with code for single cell related papers

Short course on reproducible science: what, why, how

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Software Papers as Software Modules: Towards a Culture of Reusable Results

🐳 Containerize R Markdown documents for continuous reproducibility

SEER, reimplemented in python 🐍🔮

A Collection of Variational Autoencoders (VAE) in PyTorch.

Cookbook examples for the Insight Toolkit documented with Sphinx

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Curated set of transformers that make your work with steppy faster and more effective 🔭

PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.

Shared artifacts in the Collective Knowledge Format as a proof-of-concept to reproduce our recent Collective Mind- and Collective Knowledge-related papers

MEX Vocabulary: a lightweight machine learning interchange format

Website for NA-MIC Project Weeks

FMA: A Dataset For Music Analysis

Singularity: Application containers for Linux

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

a research software; a fun way of storing files & folders on your local disk drive; tagging

Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

Scientific reports/literate programming for Julia

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

Live code in Pandoc Markdown

Avalanche: a End-to-End Library for Continual Learning.

An R package for data screening

An R-focused pipeline toolkit for reproducibility and high-performance computing

A research tool for the Iterated Prisoner's Dilemma

A platform for end-to-end development of machine learning solutions in biomedical imaging

Presentation-Ready Data Summary and Analytic Result Tables

🚀 Build and manage real-life data science projects with ease!

Lightweight, Python library for fast and reproducible experimentation 🔬

awesome open list of pointers about open science for software and computational science

Workflow Description Language - Specification and Implementations

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

An R package for storing and retrieving data.frames in git repositories.

Effortless method to record provenance in Python

Experiments for understanding disentanglement in VAE latent representations

RNA-seq workflow using STAR and DESeq2