371 Open source projects that are alternatives of or similar to germline-DNA

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Make it possible to chain regular functions

No description or website provided.

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Generate beautiful documentation for your data pipelines in markdown format

A library to facilitate machine learning on multi-dimensional images.

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Swarm CI - Docker Swarm-based CI system or enhancement to existing systems.

Continuous Integration Platform

tfa is a 2fa cli tool that aims to help you to generate 2fa code on CI/CD pipelines.

Fun functional programming with pipelinable functions

基于Spring Cloud的微服务业务框架

Helper for dealing with secrets in kubernetes.

Pipelines as Code

Google Classroom Data Pipeline

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Prometheus spot instance exporter to monitor AWS instance termination with Hollowtrees

A curated collection of publicly available resources on how companies around the world practice DevOps

Simple and flexible ML workflow engine

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

A non-intrusive Python pipeline.

FreeCAD - flamingo workbench

A pure bash clojureish CI pipeline

The Rx Asset Management System for motion picture production

RNA-seq analysis pipeline for detection gene-fusions

Today I Learned

Pytorch Implementation of GoEmotions 😍😢😱

metaGraf is a opinionated specification for describing a software component and what its requirements are from the runtime environment. The mg command, turns metaGraf specifications into Kubernetes resources, supporting CI, CD and GitOps software delivery.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程，一切想到的，想不到的，应有尽有

🚀 Automate versioning, changelog creation, README updates and GitHub releases using GitHub Actions,npm, docker or bash.

M-Lab ingestion pipeline

This module allows a developer to upload SAPUI5/OpenUI5 sources into a SAP NetWeaver ABAP system.

TypeScript/JavaScript utilities for those who don't like utilities

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

Riscv32 CPU Project

🇨🇳 MyDataHarbor是一个致力于解决任意数据源到任意数据源的分布式、高扩展性、高性能、事务级的数据同步中间件。帮助用户可靠、快速、稳定的对海量数据进行准实时增量同步或者定时全量同步，主要定位是为实时交易系统服务，亦可用于大数据的数据同步（ETL领域）。

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

An example of how to run a Golang project in Docker in a Buildkite pipeline

SciKIt-learn Pipeline in PAndas

This code is used to build & run a Docker container for performing predictions against a Spark ML Pipeline.

Old specification for Hack pipes in JavaScript. Please go to the new specification.

Catalyst.Classification

A build system for modular development in Salesforce, delivered as a sfdx plugin that can be implemented in any CI/CD system of choice

Use AutoAI to detect fraud

Transformers Pipeline with KoELECTRA

Node & Express Demo App for Azure DevOps

A python framework to process FITS images. Built for Astronomy.

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

A lightweight data processing framework for Apache Spark

🔬 De novo assembly of nanopore reads using nextflow

💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.

A lightweight, distributed workflow system

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

An image build orchestrator for the modern web

An example project that predicts risk of credit card default using a Logistic Regression classifier and a 30,000 sample dataset.

A stream processing framework for high-throughput applications.

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer