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Top 3 gatk4 open source projects

sentieon-dnaseq

Sentieon DNAseq

✭ 18

shell acceleration gatk bioinformatics-pipeline variant-calling dnaseq bwa-mem dna-sequencing sentieon gatk4 genomics-data

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

✭ 21

wdl python pipeline variantcalling multisample gatk4 gatk-bestpractices

human genomics pipeline

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

✭ 19

python shell CSS pipeline genomics exome-pipeline illumina nvidia-gpu cohort-analysis gatk4 snakemake-pipeline gatk-bestpractices nvidia-clara-parabricks

1-3 of 3 gatk4 projects