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pipecolorA terminal filter to colorize output
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metagrafmetaGraf is a opinionated specification for describing a software component and what its requirements are from the runtime environment. The mg command, turns metaGraf specifications into Kubernetes resources, supporting CI, CD and GitOps software delivery.
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emg-viral-pipelineVIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
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topicAppA simple Shiny App for Topic Modeling in R
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kubecryptHelper for dealing with secrets in kubernetes.
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TAKGThe official implementation of ACL 2019 paper "Topic-Aware Neural Keyphrase Generation for Social Media Language"
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pipe-traitMake it possible to chain regular functions
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get phylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches
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re-moteRe-mote operations using SSH and Re-gent
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twicTopic Words in Context (TWiC) is a highly-interactive, browser-based visualization for MALLET topic models
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sfpowerscriptsA build system for modular development in Salesforce, delivered as a sfdx plugin that can be implemented in any CI/CD system of choice
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biojupiesAutomated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
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dropEstPipeline for initial analysis of droplet-based single-cell RNA-seq data
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bash-streams-handbook💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.
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TILToday I Learned
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TOGGLEToolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
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bistroA library to build and execute typed scientific workflows
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rurality开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程,一切想到的,想不到的,应有尽有
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linesA pure bash clojureish CI pipeline
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basinBasin is a visual programming editor for building Spark and PySpark pipelines. Easily build, debug, and deploy complex ETL pipelines from your browser
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nanoflow🔬 De novo assembly of nanopore reads using nextflow
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antiutilsTypeScript/JavaScript utilities for those who don't like utilities
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lightflowA lightweight, distributed workflow system
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towheeTowhee is a framework that is dedicated to making neural data processing pipelines simple and fast.
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dnaPipeTEdnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
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TopicNetInterface for easier topic modelling.
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pydataberlin-2017Repo for my talk at the PyData Berlin 2017 conference
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machine-learningPython machine learning applications in image processing, recommender system, matrix completion, netflix problem and algorithm implementations including Co-clustering, Funk SVD, SVD++, Non-negative Matrix Factorization, Koren Neighborhood Model, Koren Integrated Model, Dawid-Skene, Platt-Burges, Expectation Maximization, Factor Analysis, ISTA, F…
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proposal-hack-pipesOld specification for Hack pipes in JavaScript. Please go to the new specification.
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LabPypeFramework for Creating Pipeline Software
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SeqToolsA python library to manipulate and transform indexable data (lists, arrays, ...)
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hyperdriveExtensible streaming ingestion pipeline on top of Apache Spark
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Product-Categorization-NLPMulti-Class Text Classification for products based on their description with Machine Learning algorithms and Neural Networks (MLP, CNN, Distilbert).
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smagShow Me A Graph - Command Line Graphing
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pipenpipen - A pipeline framework for python
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tassalTree-based Autofolding Software Summarization Algorithm
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k3ai-coreK3ai-core is the core library for the GO installer. Go installer will replace the current bash installer
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RNASeqRNASeq pipeline
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bacannotGeneric but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
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flamingoFreeCAD - flamingo workbench
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godot-exporterGodot Engine Automation Pipeline Android – iOS – Linux – MacOS – Windows – HTML5 – Itch.io.
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ctdna-pipelineA simplified pipeline for ctDNA sequencing data analysis
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