UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (+286.21%)
Mutual labels: bioinformatics, pipeline, ngs
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+2700%)
Mutual labels: bioinformatics, pipeline, ngs
MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (-10.34%)
Mutual labels: pipeline, ngs
sc2-illumina-pipelineBioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
Stars: ✭ 18 (-37.93%)
Mutual labels: bioinformatics, pipeline
companionThis repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
Stars: ✭ 21 (-27.59%)
Mutual labels: bioinformatics, pipeline
ngs pipelineExome/Capture/RNASeq Pipeline Implementation using snakemake
Stars: ✭ 40 (+37.93%)
Mutual labels: pipeline, ngs
IARC-nfList of IARC bioinformatics nextflow pipelines
Stars: ✭ 34 (+17.24%)
Mutual labels: pipeline, ngs
catchA package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (+89.66%)
Mutual labels: bioinformatics, ngs
Bedops🔬 BEDOPS: high-performance genomic feature operations
Stars: ✭ 215 (+641.38%)
Mutual labels: bioinformatics, pipeline
reg-genRegulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Stars: ✭ 64 (+120.69%)
Mutual labels: bioinformatics, ngs
OpenGene.jl(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Stars: ✭ 60 (+106.9%)
Mutual labels: bioinformatics, ngs
bistroA library to build and execute typed scientific workflows
Stars: ✭ 43 (+48.28%)
Mutual labels: bioinformatics, pipeline
needlestackMulti-sample somatic variant caller
Stars: ✭ 45 (+55.17%)
Mutual labels: pipeline, ngs
ngs-preprocessA pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Stars: ✭ 22 (-24.14%)
Mutual labels: pipeline, ngs
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-41.38%)
Mutual labels: bioinformatics, ngs
grape-nfAn automated RNA-seq pipeline using Nextflow
Stars: ✭ 30 (+3.45%)
Mutual labels: pipeline, ngs
atroposAn NGS read trimming tool that is specific, sensitive, and speedy. (production)
Stars: ✭ 109 (+275.86%)
Mutual labels: bioinformatics, ngs
DNAscanDNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
Stars: ✭ 36 (+24.14%)
Mutual labels: pipeline, ngs
Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: ✭ 170 (+486.21%)
Mutual labels: bioinformatics, pipeline
DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+8189.66%)
Mutual labels: bioinformatics, ngs
