261 Open source projects that are alternatives of or similar to Liftr

Short course on reproducible science: what, why, how

Fully reproducible, open source scientific articles in LaTeX.

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Reproducible Science: what, why, how

A DSL for data-driven computational pipelines

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

Programming with R

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

Examples and demos for ReproZip

Copy to Clipboard Buttons for RMarkdown HTML Documents

RStudio addin for wrapping RMarkdown paragraphs

Rmarkdown templates for reproducible science

Lightweight infrastructure to handle multiple rmarkdown reports

Future Gadget Machine

Extend {knitr} with hooks

Dynamic Documents with R and knitr

Reproducible Research with Rmarkdown: data management, analysis, and reporting all-in-one

Extra-strength glue engines for R Markdown and Quarto

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Papers with code for single cell related papers

🔬 Empirical CLI

Source code for the CERN Analysis Preservation portal

List of resources for learning R

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown.

Construct Complex Table with knitr::kable() + pipe.

Everware is about re-useable science, it allows people to jump right in to your research code.

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Reproducible Data Science in Python (SciPy 2019 Tutorial)

A builder for LaTeX, knitr, literate Agda, literate Haskell and Pweave that automatically builds dependencies.

An R Pandoc Writer: Convert arbitrary R objects into markdown

rrtools: Tools for Writing Reproducible Research in R

Chain simple surveys into longer runs to build complex studies. Use R to generate pretty feedback and complex designs.

Future Gadget Laboratory

A general-purpose tool for dynamic report generation in R

Package an R workspace and all dependencies as a Docker container

A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models.

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

📺 Links to HTML5 presentations made using the R package {xaringan}.

Software Papers as Software Modules: Towards a Culture of Reusable Results

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

A curated list of reproducible research case studies, projects, tutorials, and media

R package to interface with OpenML

FMA: A Dataset For Music Analysis

Statistical Analysis of RNA-Seq Tools

Some (magical) printing methods for knitr

RStudio addin for formatting Rmarkdown tables

✨ Create magical grid layouts in Shiny & Markdown

A xaringan / remark js ninja theme

Post R Markdown documents to Confluence

👩‍🔬👨‍🔬 Another R Markdown Better Scientific Poster

IQSS Data Science Services workshop materials

project page for creating a guide to reproducible research

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

『データ解析のための統計モデリング入門』の勉強ノート

Express parametrable, composable and portable data pipelines

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

R package that makes basic data exploration radically simple (interactive data exploration, reproducible data science)