398 Open source projects that are alternatives of or similar to Mixcr

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGen…

Estimate metagenomic coverage and sequence diversity

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

Bioinformatics Workbook repository

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Javascript full-stack framework for Big Data visualisation and analysis

Fast motif matching in R

A library to build and execute typed scientific workflows

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

React rerelease of MSAViewer

Conda recipes for the bioconda channel.

Genotyping of segregating mobile elements insertions

A wrapper for the EnsEMBL REST API

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Bio4j abstract model and general entry point to the project

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Per-base per-nucleotide depth analysis

SquiggleKit: A toolkit for manipulating nanopore signal data

Genomics data visualization in Python by using matplotlib.

(formerly eelpond) an automated RNA-Seq workflow system

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Assembling the cause of phenotypes and genotypes from NGS data

highly-efficient & lightweight mutation signature matrix aggregation

Stacked Denoising AutoEncoder based on TensorFlow

GO enrichment with python -- pandas meets networkx

GWAS summary statistics files QC tool

DEPRECIATED! Please use nf-core/tools instead

Rapid determination of appropriate reference genomes.

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

A Python package for fast operations on 1-dimensional genomic signal tracks

3D printed sculpture of a DNA molecule, showing my own genome

MyGene.info: A BioThings API for gene annotations

Bystro genetic analysis (annotation, filtering, statistics)

Robust, flexible and resource-efficient pipelines using Go and the commandline

A Python platform for Structural Bioinformatics

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Mulled - Automatized Containerized Software Repository

Toolkit for processing sequences in FASTA/Q formats

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A fast whole-genome aligner based on de Bruijn graphs

MView extracts and reformats the results of a sequence database search or multiple alignment.

Scalable genomic data analysis.

A curated list of resources for machine learning for small-molecule drug discovery

Python module for average nucleotide identity analyses

Version 5 of the CAFE phylogenetics software

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Feature extraction algorithm for genomic data

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

R package for analyzing single-cell RNA-seq data

Package for fetching metadata and downloading data from SRA/ENA/GEO

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Simple simulation of single-cell RNA sequencing data

An efficient FASTQ manipulation suite

Structural variant toolkit for VCFs

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

exploratory and interactive microbiome analyses based on heatmaps