480 Open source projects that are alternatives of or similar to Mmseqs2

LAMBDA – the Local Aligner for Massive Biological DatA

SortMeRNA: next-generation sequence filtering and alignment tool

Remote protein homology detection suite.

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

A fast whole-genome aligner based on de Bruijn graphs

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

DOM Text Based Multiple Sequence Alignment Library

The Chemistry Development Kit

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

An analysis and visualization platform for 'omics data

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Modular and universal bioinformatics

Precisely align, move, and measure+match objects and mesh parts in your 3D scenes.

Accurate sample inference from amplicon data with single nucleotide resolution

The next version of bwa-mem

COBRApy is a package for constraint-based modeling of metabolic networks.

Cutadapt removes adapter sequences from sequencing reads

A cross-platform command-line tool for executing jobs in parallel

annotate a VCF with other VCFs/BEDs/tabixed files

A modern genome browser built with JavaScript and HTML5.

Working with molecular structures in pandas DataFrames

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Java utilities for Bioinformatics

Highly adaptable common interface for proteomics search and de novo engines

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Plant image analysis using OpenCV

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Toward Real-World Single Image Super-Resolution: A New Benchmark and A New Model (ICCV 2019)

Robust Point Cloud Registration Using Iterative Probabilistic Data Associations ("Robust ICP")

An open source platform for managing and analyzing biomedical big data

Bioinformatics containers

Structural variant and indel caller for mapped sequencing data

Ultra-fast and memory-efficient (meta-)genome assembler

A high-performance, Pythonic language for bioinformatics

Python library to facilitate genome assembly, annotation, and comparative genomics

A React web application to query and share any PostgreSQL database.

A scikit-learn compatible library for graph kernels

👁 Python library to plot DNA sequence features (e.g. from Genbank files)

d3 library to build circular graphs

face detection alignment recognition reconstruction ...

Open-source bioinformatics components for Dash

Example client programs for Saphetor's VarSome annotation API

CMU MultimodalSDK is a machine learning platform for development of advanced multimodal models as well as easily accessing and processing multimodal datasets.

Real-time species-typing visualisation for nanopore data.

Interactive network visualization in Python and Dash, powered by Cytoscape.js

"Automatic Language-Agnostic Subtitle Synchronization"

facenet recognition and retrieve by using hnswlib and flask, convert tensorflow model to caffe

SeqAn's official repository.

This is Flutter Page Transition Package

Aim to be the bioinformatics repository with more and newer packages

This library tackles the construction and efficient execution of computational chemistry workflows

Bioinformatics one liners from Ming Tang

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

A fast and sensitive gapped read aligner

Efficient pythonic random access to fasta subsequences

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.