GitPlanet

Cheap and reliable Node.js hosting starts at $3/month, and $1/month static HTML hosting

Created with love in Canada, visit hostnodejs.com today

Feel like to post an Ad? Learn Details
All Projects → danforthcenter → Plantcv

danforthcenter / Plantcv

Licence: mit
Plant image analysis using OpenCV

Programming Languages

python
139335 projects - #7 most used programming language

Labels

bioinformaticsscience

Projects that are alternatives of or similar to Plantcv

Ugene
UGENE is free open-source cross-platform bioinformatics software
Stars: ✭ 112 (-68.18%)
Mutual labels:  bioinformatics, science
Deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+582.95%)
Mutual labels:  bioinformatics, science
Ngless
NGLess: NGS with less work
Stars: ✭ 115 (-67.33%)
Mutual labels:  bioinformatics, science
Gatk
Official code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+184.66%)
Mutual labels:  bioinformatics, science
catch
A package for designing compact and comprehensive capture probe sets.
Stars: ✭ 55 (-84.37%)
Mutual labels:  science, bioinformatics
Arcs
🌈Scaffold genome sequence assemblies using linked read sequencing data
Stars: ✭ 67 (-80.97%)
Mutual labels:  bioinformatics, science
Awesome Biology
Curated (meta)list of resources for Biology.
Stars: ✭ 174 (-50.57%)
Mutual labels:  bioinformatics, science
Rnaseq Workflow
A repository for setting up a RNAseq workflow
Stars: ✭ 170 (-51.7%)
Mutual labels:  bioinformatics, science
sirius
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Stars: ✭ 32 (-90.91%)
Mutual labels:  science, bioinformatics
Homebrew Bio
🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Stars: ✭ 237 (-32.67%)
Mutual labels:  bioinformatics, science
Splatter Paper
Data and analysis for the Splatter paper
Stars: ✭ 17 (-95.17%)
Mutual labels:  bioinformatics, science
Anvio
An analysis and visualization platform for 'omics data
Stars: ✭ 273 (-22.44%)
Mutual labels:  bioinformatics, science
Galaxy
Data intensive science for everyone.
Stars: ✭ 812 (+130.68%)
Mutual labels:  bioinformatics, science
Genomics
A collection of scripts and notes related to genomics and bioinformatics
Stars: ✭ 101 (-71.31%)
Mutual labels:  bioinformatics, science
Nanopolish
Signal-level algorithms for MinION data
Stars: ✭ 367 (+4.26%)
Mutual labels:  bioinformatics, science
Abyss
🔬 Assemble large genomes using short reads
Stars: ✭ 219 (-37.78%)
Mutual labels:  bioinformatics, science
qmflows
This library tackles the construction and efficient execution of computational chemistry workflows
Stars: ✭ 35 (-90.06%)
Mutual labels:  science, bioinformatics
Jvarkit
Java utilities for Bioinformatics
Stars: ✭ 313 (-11.08%)
Mutual labels:  bioinformatics, science
Edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Stars: ✭ 298 (-15.34%)
Mutual labels:  bioinformatics
Biopandas
Working with molecular structures in pandas DataFrames
Stars: ✭ 329 (-6.53%)
Mutual labels:  bioinformatics
View All Similar Projects ➔

builds codecov Documentation Status Binder Docker Pulls GitHub release PyPI version Conda license

PlantCV: Plant phenotyping using computer vision

Please use, cite, and contribute to PlantCV! If you have questions, please submit them via the GitHub issues page. Follow us on twitter @plantcv.

Introduction to PlantCV

PlantCV is an open-source image analysis software package targeted for plant phenotyping. PlantCV provides a common programming and documentation interface to a collection of image analysis techniques that are integrated from a variety of source packages and algorithms. PlantCV utilizes a modular architecture that enables flexibility in the design of analysis workflows and rapid assimilation and integration of new methods. For more information about the project, links to recorded presentations, and publications using PlantCV, please visit our homepage: https://plantcv.danforthcenter.org/.

Quick Links

Citing PlantCV

If you use PlantCV, please cite the PlantCV publications relevant to your work. To see how others have used PlantCV in their research, check out our list of publications using PlantCV.

Issues with PlantCV

Please file any PlantCV suggestions/issues/bugs via our GitHub issues page. Please check to see if any related issues have already been filed.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].