434 Open source projects that are alternatives of or similar to mmtf

PDB parser in Haskell

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure

A collection of useful tutorials for Protein Science

🗜 Ultra tiny serializer / encoder with plugin-support. Useful to build binary files containing images, strings, numbers and more!

A free, open-source compressor for the ZX0 format

Multichannel time series lossless compression in pure Python based on NumPy and zlib

A Rollup configuration to build modern web applications with sweet features as for example SCSS imports, Service Worker generation with Workbox, Karma testing, live reloading, coping resources, chunking, treeshaking, Typescript, license extraction, filesize visualizer, JSON import, budgets, build progress, minifying and compression with brotli a…

Neuroscience information exchange format

A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto

Albis: High-Performance File Format for Big Data Systems

De novo protein structure prediction using iteratively predicted structural constraints

Maybe one day a WINE-style implementation of the classic Mac Toolbox.

7-zip VB6 Helper

DSP and filtering library

CSS, Javascript and Images packer/processors to Laravel

A C++ library for integer array compression

bzip2 for Ruby

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

Generic image compressor for machine learning. Pytorch code for our paper "Lossy compression for lossless prediction".

Cython bindings for fpzip, a floating point image compression algorithm.

Prunable nn layers for pytorch.

Deduplicating archiver with encryption and paranoid-level tests. Swiss army knife for the serious backup and disaster recovery manager. Ransomware neutralizer. Win/Linux/Unix

(Not actively maintained, use DRV3-Sharp) Tools for extracting and re-injecting files for Danganronpa V3 for PC.

Analyze zipfile, either local, or from url

⌛ Benchmark and visualization of various compression algorithms

A native Go 7z archive reader.

An Objective-C and Swift library for Zstd (Zstandard) compression and decompression.

Simple, consistent interfaces for any codec.

Replacement for golang http.FileServer which supports precompressed static assets.

FasterAI: A repository for making smaller and faster models with the FastAI library.

A .NET port of Google’s HtmlCompressor library to minify HTML source code.

CharLS, a C++ JPEG-LS library implementation

Compression and Encryption Virtual File System for SQLite 3.

encode.ru community archiver

Java implementation of the openCTM Mesh compression file format

Compression Streams Explained

JS Library for Guaranteed compression of Unicode short strings

FASTQ compression

A research library for pytorch-based neural network pruning, compression, and more.

A simple tool to extract motion vectors from h264 encoded videos.

Scripts and Ansible playbook to setup Arch Linux on ZFS.

zstd-decoder in pure rust

Free open-source compressor for apLib with 5-7% better ratios

MacOSX QuickLook Generator for zip, jar, tar, tar.gz (.tgz), tar.bz2 (.tbz2/.tbz), tar.Z. xar (.xar, .pkg), debian (.deb), RedHat Package Manager (.rpm), 7zip (.7z), xz, Microsoft cabinet (.cab), gzip (.gz), lha, BinHex 4.0 (.hqx), and Stuffit (.sit) archives, and ISO9660 images

Modeling molecular ensembles with scalable data structures and parallel computing

A java implementation of the NBT protocol, including a way to implement custom tags.

View proteins and trajectories in the terminal

MGARD: MultiGrid Adaptive Reduction of Data

An all-atom protein structure dataset for machine learning.

Cloud syncing manager for multiple MEGA cloud storage accounts with syncing, data gathering, compresssion and optimization capabilities.

An awesome tour booking web app written in NodeJS, Express, MongoDB 🗽

A pure Java library for scanning and enumerating RAR archive contents

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Snappy compression for Zig

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

A pure Java HDF5 library

This is a library of FFmpeg for android... 📸 🎞 🚑

[ICML2020] "AutoGAN-Distiller: Searching to Compress Generative Adversarial Networks" by Yonggan Fu, Wuyang Chen, Haotao Wang, Haoran Li, Yingyan Lin, Zhangyang Wang