All Projects → G-Node → nix

G-Node / nix

Licence: Unknown, Unknown licenses found Licenses found Unknown LICENSE Unknown LICENSE.h5py
Neuroscience information exchange format

Programming Languages

C++
36643 projects - #6 most used programming language
CMake
9771 projects
DTrace
51 projects
Dockerfile
14818 projects
shell
77523 projects
emacs lisp
2029 projects

Projects that are alternatives of or similar to nix

Brainiak
Brain Imaging Analysis Kit
Stars: ✭ 232 (+262.5%)
Mutual labels:  neuroscience
CellExplorer
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
Stars: ✭ 55 (-14.06%)
Mutual labels:  neuroscience
CCN Association
认知计算神经联盟 讨论会
Stars: ✭ 49 (-23.44%)
Mutual labels:  neuroscience
Pyphi
A toolbox for integrated information theory.
Stars: ✭ 246 (+284.38%)
Mutual labels:  neuroscience
cyclops
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
Stars: ✭ 38 (-40.62%)
Mutual labels:  neuroscience
pyRiemann
Python machine learning package based on sklearn API for multivariate data processing and statistical analysis of symmetric positive definite matrices via Riemannian geometry
Stars: ✭ 470 (+634.38%)
Mutual labels:  neuroscience
Awesome Computational Neuroscience
A list of schools and researchers in computational neuroscience
Stars: ✭ 230 (+259.38%)
Mutual labels:  neuroscience
PsyNeuLink
A block modeling system for cognitive neuroscience
Stars: ✭ 73 (+14.06%)
Mutual labels:  neuroscience
stringer-pachitariu-et-al-2018a
Recordings of 10k neurons during spontaneous behaviors
Stars: ✭ 43 (-32.81%)
Mutual labels:  neuroscience
ndstore
code for storing neurodata images and image annotations
Stars: ✭ 39 (-39.06%)
Mutual labels:  neuroscience
twpca
🕝 Time-warped principal components analysis (twPCA)
Stars: ✭ 118 (+84.38%)
Mutual labels:  neuroscience
nengo-dl
Deep learning integration for Nengo
Stars: ✭ 76 (+18.75%)
Mutual labels:  neuroscience
nftsim
C++ library for simulation of multiscale neural field dynamics
Stars: ✭ 24 (-62.5%)
Mutual labels:  neuroscience
Open Computational Neuroscience Resources
A publicly-editable collection of open computational neuroscience resources
Stars: ✭ 234 (+265.63%)
Mutual labels:  neuroscience
spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
Stars: ✭ 193 (+201.56%)
Mutual labels:  neuroscience
Brayns
Visualizer for large-scale and interactive ray-tracing of neurons
Stars: ✭ 232 (+262.5%)
Mutual labels:  neuroscience
Pyllusion
A Parametric Framework to Generate Visual Illusions using Python
Stars: ✭ 35 (-45.31%)
Mutual labels:  neuroscience
zipdump
Analyze zipfile, either local, or from url
Stars: ✭ 25 (-60.94%)
Mutual labels:  file-format
arbor
The Arbor multi-compartment neural network simulation library.
Stars: ✭ 87 (+35.94%)
Mutual labels:  neuroscience
brian2cuda
A brian2 extension to simulate spiking neural networks on GPUs
Stars: ✭ 46 (-28.12%)
Mutual labels:  neuroscience

gh actions tests Build status Coverage


nix_logo

About NIX

The NIX project started as an initiative within the Electrophysiology Task Force a part of the INCF Data sharing Program. The NIX data model allows to store fully annotated scientific dataset, i.e. the data together with its metadata within the same container. Our aim is to achieve standardization by providing a common/generic data structure for a multitude of data types. See the wiki for more information

The current implementations store the actual data using the HDF5 file format as a storage backend.

Documentation --- where to find which information?

Project documentation is split up into three parts:

  1. Technical information: Please visit the GitHub repository Wiki.
  2. General Introduction and tutorial: Visit the project pages on ReadTheDocs
  3. API documentation: Is part of the project pages on ReadTheDocs

Further project related information:

  • We have assembled a set of tutorials and demos using the python library.

The NIX ecosystem

In this repository you find the C++ library for reading and writing NIX files.

Language bindings

We provide bindings in various languages:

IO class for the NEO data model for spike train data.

Tools

  • Viewer for NIX data files nixView

Getting Started

Platform specific installation instructions can be found:

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].