74 Open source projects that are alternatives of or similar to Ngsf

Tools for working with genomic and high throughput sequencing data.

RNA-seq workflow using STAR and DESeq2

R package for analyzing single-cell RNA-seq data

NGLess: NGS with less work

UGENE is free open-source cross-platform bioinformatics software

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Sequana: a set of Snakemake NGS pipelines

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

A method for variant graph genotyping based on exact alignment of k-mers

ABRA2

Official code repository for GATK versions 4 and up

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)