UGENE

Download UGENE: https://ugeneunipro.github.io/ugene/

Building UGENE

Prerequisites

Make sure the Qt (>= 5.4.2 and <= 5.15) development libraries are installed:

We highly recommend you to install Qt to any operating system with Qt online-installer. This is the main way for Windows and macOS operating systems, also available for Linux. To install Qt, download the online-installer from Qt official site (http://www.qt.io/download/). Make sure, that you have installed the following components:

• Qt Prebuild components
• QtScript

Other options to install Qt:

• Ubuntu >=14.04: `sudo apt-get install qt5-default qttools5-dev-tools qtscript5-dev libqt5svg5-dev
• Ubuntu 12.04:
  • Download and install Qt 5.5.1: www.qt.io/download-open-source/
  • Set the system variable: export PATH=$PATH:~/Qt5.5.1/5.5/gcc_64/bin
  • sudo apt-get install g++ libgl1-mesa-dev libglu1-mesa-dev
• Fedora: sudo yum install qt5-qtscript-devel qt5-qtbase-devel qt5-qtsvg-devel qt5-linguist gcc-c++ redhat-rpm-config mesa-libGLU-devel
• Arch Linux: sudo pacman -S qtavailable

Also add "path/to/Qt//bin" to the PATH variable.

For Windows users:

To build with devenv (Visual Studio)

1. qmake -r -tp vc ugene.pro
2. open ugene.sln from Visual Studio and build or run devenv.exe ugene.sln /Build from MSVC command line

To build with nmake.exe:

1. qmake -r ugene.pro
2. run nmake, nmake debug or nmake release to build UGENE

Also you need to add "libeay.dll" and "ssleay.dll" from OpenSSL ToolKit. Put these libs to the directory which is avaliable with the PATH variable.

For *nix users:

0. installation paths may be set up in ugene_globals.pri
1. qmake -r (Fedora: qmake-qt5 -r)
2. make -j 4
3. sudo make install
4. ugene -ui

Note: usually, make builds a release version of UGENE. However, on certain platforms default target is debug. To enforce release build use make release or make all.

Some more information you can see in installer/_common_data/README file.

Build with CUDA

1. Download and install required software from http://www.nvidia.com/object/cuda_get.html for your OS

2. Make sure that some system variable are set:

   CUDA_LIB_PATH=/path_where_cuda_installed/lib
   CUDA_INC_PATH=/path_where_cuda_installed/include
   PATH=$PATH:/path_where_cuda_installed/bin
   

   for *nix: LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUDA_LIB_PATH

3. cd ./src and open ugene_globals.pri, find and set variable UGENE_CUDA_DETECTED = 1

Build with OpenCL

1. Download and install video driver wich supports OpenCL
2. Download OpenCL headers from http://www.khronos.org/registry/cl/ or find them in video vendor SDK directory.
3. make sure that you have system variable is set correctly: OPENCL_INC_PATH=/path_where_open_cl_installed
4. cd ./src and open ugene_globals.pri, find and set variable UGENE_OPENCL_DETECTED = 1

Other notes:

2. UGENE is be build for x86_64 arch by default, add CONFIG+=x86 to the qmake command to build 32-bit version of UGENE. E.g. for Windows: qmake -r -tp vc CONFIG+=x86 ugene.pro

   ATTENTION: 32-bit version is not officially supported since UGENE v. 34.0