612 Open source projects that are alternatives of or similar to papers-as-modules

rrtools: Tools for Writing Reproducible Research in R

Reproducible Data Science in Python (SciPy 2019 Tutorial)

Examples and demos for ReproZip

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Short course on reproducible science: what, why, how

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

A curated list of reproducible research case studies, projects, tutorials, and media

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Academic papers and articles that I read related to web hacking, fuzzing, etc. / 阅读过的Web安全方向、模糊测试方向的一些论文与阅读笔记

Workflow Description Language - Specification and Implementations

Presentation-Ready Data Summary and Analytic Result Tables

Fully reproducible, open source scientific articles in LaTeX.

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Function-oriented Make-like declarative workflows for R

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

Source code for the CERN Analysis Preservation portal

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Example workflows for the drake R package

A set of tools for R that enhance reproducibility beyond package management

⛔ ARCHIVED ⛔

An R-focused pipeline toolkit for reproducibility and high-performance computing

Everware is about re-useable science, it allows people to jump right in to your research code.

🔬 Empirical CLI

Future Gadget Laboratory

Package an R workspace and all dependencies as a Docker container

Short course on the targets R package

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

Coding Standards for the USC Biostats group

Lightweight, Python library for fast and reproducible experimentation 🔬

Future Gadget Machine

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

Pythonic functions for creating and enhancing Hydra applications

Deploy a BinderHub from scratch on Microsoft Azure

Data Analysis Workflows & Reproducibility Learning Resources

Curated set of transformers that make your work with steppy faster and more effective 🔭

This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.

LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.

A DSL for data-driven computational pipelines

This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.

Reproducible Science: what, why, how

Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.

Papers with code for single cell related papers

🐳 Containerize R Markdown documents for continuous reproducibility

creating optimal conditions for reproducibility

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

project page for creating a guide to reproducible research

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

A minimal example data analysis project with the targets R package

Open solution to the Google AI Object Detection Challenge 🍁

A set of tools for fuzzing SecureROM. Managed to find and trigger checkm8.

A curated list of papers, theses, datasets, and tools related to the application of Machine Learning for Software Engineering

Python bindings for calling radamsa mutators

Synchronize your working directory efficiently to a remote place without committing the changes.

Semi-Supervised Video Object Segmentation(VOS) Paper List

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

go-sqlancer

Research papers on ML for security

My fuzzing corpus

Curated list of classic fuzzing books, papers about fuzzing at information security top conferences over the years, commonly used fuzzing tools, and resources that can help us use fuzzer easily.