214 Open source projects that are alternatives of or similar to pyrodigal

Amplifier allows .NET developers to easily run complex applications with intensive mathematical computation on Intel CPU/GPU, NVIDIA, AMD without writing any additional C kernel code. Write your function in .NET and Amplifier will take care of running it on your favorite hardware.

A package for designing compact and comprehensive capture probe sets.

Transpose: SIMD Integer+Floating Point Compression Filter

MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

Move to: https://github.com/templexxx/xorsimd

Graph based multi genome aligner

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Workflow for Building Microsynteny Networks

A fast 23andMe DNA parser and inferrer for Python

Research on polio / protein folding.

.NET Core 3.0 implementation of AES-GCM-SIV nonce misuse-resistant authenticated encryption

Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SRARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermittel…

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development Version)

Boost SIMD

SIMDized check which bytes are in a set

Remote protein homology detection suite.

Genome Interval Arithmetic in R

Also referred to as "The C Man"

Quick ADC

Modular node based noise generation library using SIMD, C++17 and templates

Comparing linear and binary searches

The HPC toolbox: fused matrix multiplication, convolution, data-parallel strided tensor primitives, OpenMP facilities, SIMD, JIT Assembler, CPU detection, state-of-the-art vectorized BLAS for floats and integers

DSP library for signal processing

CATransform3D manipulation made easy.

Learning and practice of high performance computing (CUDA, Vulkan, OpenCL, OpenMP, TBB, SSE/AVX, NEON, MPI, coroutines, etc. )

The Compute Library is a set of computer vision and machine learning functions optimised for both Arm CPUs and GPUs using SIMD technologies.

🔬 Assemble large genomes using short reads

A binary library for very fast face detection using compact CNNs.

Triangle rasterization routines accelerated by SSE and AVX

Intel SPMD Program Compiler

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Highly optimized inference engine for Binarized Neural Networks

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

JPEG artifacts removal based on quantization coefficients.

GenomeTools genome analysis system.

An imperative and functional programming language

qHilbert is a vectorized speedup of Hilbert curve generation using SIMD intrinsics

The Higher-Order Intermediate Representation

Viral genomics analysis pipelines

Base64 coding and decoding with SIMD instructions (SSE/AVX2/AVX512F/AVX512BW/AVX512VBMI/ARM Neon)

A SIMD-accelerated concurrent hash table.

A small study in hardware accelerated AoS reversal

Genomic Data Retrieval with R

Amplifier allows .NET developers to easily run complex applications with intensive mathematical computation on Intel CPU/GPU, NVIDIA, AMD without writing any additional C kernel code. Write your function in .NET and Amplifier will take care of running it on your favorite hardware.

Fast numerical computation of (inverse) nonlinear Fourier transforms

SIMD for humans

C++ image processing and machine learning library with using of SIMD: SSE, SSE2, SSE3, SSSE3, SSE4.1, SSE4.2, AVX, AVX2, AVX-512, VMX(Altivec) and VSX(Power7), NEON for ARM.

Base64 encoding / decoding with SIMD-support, also base64Url

High-performance dictionary coding

Official code repository for GATK versions 4 and up

Accelerate aggregated MD5 hashing performance up to 8x for AVX512 and 4x for AVX2. Useful for server applications that need to compute many MD5 sums in parallel.

SIMD enhanced Array operations

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

Nanopore sequence read simulator

std::find simd version

[Experimental] LLVM-accelerated Generic Linear Algebra Subprograms

A python interface to access and manage VMware vSphere and ~Horizon View~

Auto-generated maths library for C and C++ based on HLSL/Cg

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs