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Top 4 bioconda open source projects

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

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python shell bioinformatics rna-seq conda bioinformatics-pipeline bioconda bioinformatics-analysis rna-seq-pipeline ncbi-sra rna-seq-workflows

Chanjo provides a better way to analyze coverage data in clinical sequencing.

✭ 46

python Makefile Dockerfile coverage sql genomics bioconda sambamba

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

✭ 38

cython python c TeX shell bioinformatics genome simd bioconda python-interface metagenomes cython-wrapper prodigal gene-finding orf-finder

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

✭ 37

C++shell TeX Dockerfile bam-files bioinformatics alignments bioconda bed bioinformatics-tool sequence-coverage

1-4 of 4 bioconda projects