24 Open source projects that are alternatives of or similar to rop

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

interactive Multi Objective K-mer Analysis

A crazy small 8-bit CPU built with only seventeen 7400-series chips.

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Tutorials, workflows, and convenience scripts for Single Cell Portal

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

GREIN : GEO RNA-seq Experiments Interactive Navigator

circular RNA analysis toolset

Scalable RNA-seq analysis

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

scGEAToolbox: Matlab toolbox for single-cell gene expression analyses

Snakemake based pipeline for RNA-Seq analysis

Fast in-silico normalization algorithm for NGS data

Version 2 of my Crazy Small CPU

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

An ultrafast tool for genome-wide survey of microsatellites and primer design

PERF is an Exhaustive Repeat Finder

Genotyping of segregating mobile elements insertions

Reference mapping for single-cell genomics

Make rapid visualizations of RNA-seq data in R

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Data-driven Network-based Bayesian Inference of Drivers