99 Open source projects that are alternatives of or similar to SBMLToolkit.jl

Simulate PK-PD models defined as ODE systems

High-performance simulations of the Porous Electrode Theory for Li-ion batteries

Work in Progress to refactor and modernize the ODEPACK Library

A python library for metabolic networks sampling and analysis

The official PySCeS project source code repository.

Files for my Nonlinear Systems and Controls class.

StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks

A brian2 extension to simulate spiking neural networks on GPUs

Computational Neuroscience Crash Course (CNCC 2019)

library of numerical methods using Armadillo

The consensus GEM for Saccharomyces cerevisiae

Piecewise Deterministic Markov Processes in Julia

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Fast Inference of Networks from Directed Regulations

python Parameter EStimation TOolbox

An interactive web portal for exploring immuno-oncology data

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

Code for Tensorflow Machine Learning Cookbook

library of C++ functions that support applications of Stan in Pharmacometrics

Adaptive solver for stiff systems of ODEs using semi-implicit Runge-Kutta method of third order

Simulate from ODE-based population PK/PD and QSP models in R

Deep Developmental Reinforcement Learning

irrlamb is a 3D game that probably involves a lot of physics and frustrating gameplay.

Operator Inference for data-driven, non-intrusive model reduction of dynamical systems.

Modern Fortran implementation of the DDEABM Adams-Bashforth algorithm

Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.

Public repository for the proposal “Physics-Informed Machine Learning Simulator for Wildfire Propagation” - MLJC University of Turin - ProjectX2020 Competition (UofT AI)

Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.

R package for statistical inference using partially observed Markov processes

Visualize curve shortening flow in your browser.

General purpose tools for high-throughput catalysis

Implementation of the paper "Self-Adaptive Physics-Informed Neural Networks using a Soft Attention Mechanism" [AAAI-MLPS 2021]

Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)

A common interface for quadrature and numerical integration for the SciML scientific machine learning organization

A library of noise processes for stochastic systems like stochastic differential equations (SDEs) and other systems that are present in scientific machine learning (SciML)

Utility functions for exponential integrators for the SciML scientific machine learning ecosystem

Chemical Reaction Neural Network