Top 10 sbml open source projects

Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

A web application to visualize and edit pathway models

Advanced Multilanguage Interface to CVODES and IDAS

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Python utilities for SBML

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

The official PySCeS project source code repository.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!