371 Open source projects that are alternatives of or similar to scrnaseq

Track translations and automate workflow.

Maya Python API 3.0

A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data

Automatically transfer issues in pipeline by commit message

🏭 PDF text extraction pipeline: self-hosted, local-first, Docker-based

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Short course on the targets R package

A high-performance observability data pipeline.

High performance transport protocol for distributed applications.

Pipelines you can compute on

This repo is no longer updated. Please see https://github.com/Autodesk/maya-usd

Blazing fast, zero configuration assets bundler for AdonisJS

create tool-agnostic, templated pipelines to be shared by multiple teams

A CLI for interacting with Tekton!

Run IaC Anywhere With Ease

🔬 BEDOPS: high-performance genomic feature operations

Deploy a secured, clustered, auto-scaling NiFi service in AWS.

🐟 High Performance Computing over Kubernetes - Core Repo 🎣

BACTpipe: An assembly and annotation pipeline for bacterial genomics

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Identify hardcoded secrets and dangerous behaviours

An automated RNA-seq pipeline using Nextflow

Jenkins实践文档 最新站点地址: http://www.idevops.site

A simple Jenkins plugin to promote artifacts.

A Drone plugin for caching current workspace files between builds to reduce your build times

Learning C++ from zero to one

Jenkins pipeline steps which provides SSH facilities such as command execution or file transfer for continuous delivery.

HUAWEI AV Pipeline Kit sample code project, which contains the Java sample code to implement functions like video playback, video super-resolution and media asset management. C++ sample code is contained for calling MediaFilter to use the sound event detection plugin.

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

CloudConductor is a workflow management system that generates and executes bioinformatics pipelines

Function Composition for OpenFaaS

⚙️ Schedule notebooks, run them like APIs, expose securely your assets: Jupyter as a viable ⚡️ Production environment

VectorSQL is a free analytics DBMS for IoT & Big Data, compatible with ClickHouse.

Collection of auditory models.

Airbyte is an open-source EL(T) platform that helps you replicate your data in your warehouses, lakes and databases.

A pixel classification based multiplexed image segmentation pipeline

A server that pulls and parses MySQL binlog, pushs change data into different sinks like Kafka.

Railway oriented programming in Ember

The safe post-production pipeline - https://getavalon.github.io/2.0

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Learn how to build a CI/CD pipeline for SAM-based applications

Machine learning platform for Web developers

BatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.

MultiBranch Actions Trigger Plugin

Fluid dynamics component of Chemical Engineering Design Library (ChEDL)

Pipelines using goroutines

Pipeline Extension for Live Trading

Powerful pipes for TypeScript, that chain Promise and ADT for you 🚌 -> ⛰️ -> 🚠 -> 🏂 -> 🚀

Dashboard for your Deployment pipeline https://dashboardhub.io/

Forecast stock prices using machine learning approach. A time series analysis. Employ the Use of Predictive Modeling in Machine Learning to Forecast Stock Return. Approach Used by Hedge Funds to Select Tradeable Stocks

Python library for creating data pipelines with chain functional programming

Multi-sample somatic variant caller

Cloud computing is a game changer for developers. What can you do in a couple hundred lines of code?

Generalised and highly customisable, hybrid-parallelism, database based, deep learning framework.

Maya > Arnold > Nuke pipeline

Build and deploy a serverless data pipeline on AWS with no effort.

Event-driven data pipelines

A declarative KubeFlow Management Tool

Spline is a tool that is capable of running locally as well as part of well known pipelines like Jenkins (Jenkinsfile), Travis CI (.travis.yml) or similar ones.