GenometoolsGenomeTools genome analysis system.
Stars: ✭ 186 (-13.49%)
Mutual labels: bioinformatics, toolkit, genomics
companionThis repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
Stars: ✭ 21 (-90.23%)
Mutual labels: bioinformatics, pipeline, genomics
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: ✭ 124 (-42.33%)
Mutual labels: bioinformatics, pipeline, genomics
RushA cross-platform command-line tool for executing jobs in parallel
Stars: ✭ 421 (+95.81%)
Mutual labels: parallel, bioinformatics, pipeline
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+277.67%)
Mutual labels: bioinformatics, pipeline, genomics
SnsAnalysis pipelines for sequencing data
Stars: ✭ 43 (-80%)
Mutual labels: bioinformatics, pipeline, genomics
UtilA collection of useful utility functions
Stars: ✭ 201 (-6.51%)
Mutual labels: parallel, conversion, compression
MinigraphProof-of-concept seq-to-graph mapper and graph generator
Stars: ✭ 206 (-4.19%)
Mutual labels: bioinformatics, genomics
Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: ✭ 170 (-20.93%)
Mutual labels: bioinformatics, pipeline
WgsimReads simulator
Stars: ✭ 178 (-17.21%)
Mutual labels: bioinformatics, genomics
FlowcraftFlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
Stars: ✭ 208 (-3.26%)
Mutual labels: pipeline, genomics
HgvsPython library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Stars: ✭ 138 (-35.81%)
Mutual labels: bioinformatics, genomics
Rangelessc++ LINQ -like library of higher-order functions for data manipulation
Stars: ✭ 148 (-31.16%)
Mutual labels: parallel, pipeline
ArtemisArtemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Stars: ✭ 135 (-37.21%)
Mutual labels: bioinformatics, genomics
RoaryRapid large-scale prokaryote pan genome analysis
Stars: ✭ 176 (-18.14%)
Mutual labels: bioinformatics, genomics
HifiasmHifiasm: a haplotype-resolved assembler for accurate Hifi reads
Stars: ✭ 134 (-37.67%)
Mutual labels: bioinformatics, genomics
Goleftgoleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
Stars: ✭ 175 (-18.6%)
Mutual labels: bioinformatics, genomics
Deep RulesTen Quick Tips for Deep Learning in Biology
Stars: ✭ 179 (-16.74%)
Mutual labels: bioinformatics, genomics
RibbonA genome browser that shows long reads and complex variants better
Stars: ✭ 184 (-14.42%)
Mutual labels: bioinformatics, genomics