273 Open source projects that are alternatives of or similar to Smoove

An R package for creating Q-Q and manhattan plots from GWAS results

A modern genome browser built with JavaScript and HTML5.

An interactive web tool for quality control of DNA sequencing data

Ultra-fast and memory-efficient (meta-)genome assembler

MISO: An open-source LIMS for NGS sequencing centres

Efficient pythonic random access to fasta subsequences

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

An open source platform for managing and analyzing biomedical big data

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A collaboratively written review paper on deep learning, genomics, and precision medicine

annotate a VCF with other VCFs/BEDs/tabixed files

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Fast genome-wide functional annotation through orthology assignment

Development repository for the Bioconductor package 'mixOmics '

Example client programs for Saphetor's VarSome annotation API

Simulate genealogical trees and genomic sequence data using population genetic models

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Framework for building fast genomics web tools with WebAssembly and WebWorkers

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

BACNET is a Java based platform to develop website for multi-omics analysis

Guided synteny alignment between duplicated genomes (within specified quota constraint)

A fast 23andMe genome text file parser, now superseded by arv

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Predict plasmids from uncorrected long read data

igv.js server and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

A curated list of bioinformatics bench-marking papers and resources.

Find causal cell-types underlying complex trait genetics

RADseq Data Exploration, Manipulation and Visualization using R

An ontology of cell types

AQUAS TF and histone ChIP-seq pipeline

A curated list of awesome bioinformatics software.

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Fast alignment and preprocessing of chromatin profiles

Code examples of fast and simple k-mer counters for tutorial purposes

Assembling the cause of phenotypes and genotypes from NGS data

A collection of publications on comparison of high-throughput sequencing technologies.

An open-access bioinformatics text

Bioinformatics library for .NET

Feature Annotation Location Description Ontology

Efficient variant-call data storage and retrieval library using the TileDB storage library.

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

Bayesian haplotype-based mutation calling

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

A Suite of Packages for Analysis of Big Genomic Data

Compute N50/NG50 and auN/auNG

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

A package for designing compact and comprehensive capture probe sets.

tools for working with genome variation graphs

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Python and C++ code for reading and writing genomics data.

Genomic Data Retrieval with R

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

nim wrapper for htslib for parsing genomics data files

NGLess: NGS with less work

Pan-genome wide association studies

📖🔬☕️ BioJava is an open-source project dedicated to providing a Java library for processing biological data.