GenomicDataCommonsProvide R access to the NCI Genomic Data Commons portal.
Stars: ✠64 (+392.31%)
Mutual labels: genomics, cancer, tcga
cancer-dataTCGA data acquisition and processing for Project Cognoma
Stars: ✠17 (+30.77%)
Mutual labels: cancer, tcga
MultiAssayExperimentBioconductor package for management of multi-assay data
Stars: ✠57 (+338.46%)
Mutual labels: genomics, tcga
psichomicsInteractive R package to quantify, analyse and visualise alternative splicing
Stars: ✠26 (+100%)
Mutual labels: tcga, alternative-splicing
shiny-iatlasAn interactive web portal for exploring immuno-oncology data
Stars: ✠43 (+230.77%)
Mutual labels: genomics, cancer
perfPERF is an Exhaustive Repeat Finder
Stars: ✠26 (+100%)
Mutual labels: genomics
ntHashFast hash function for DNA sequences
Stars: ✠66 (+407.69%)
Mutual labels: genomics
enformer-pytorchImplementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Stars: ✠146 (+1023.08%)
Mutual labels: genomics
unimapA EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✠76 (+484.62%)
Mutual labels: genomics
staramrScans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Stars: ✠52 (+300%)
Mutual labels: genomics
rare-disease-wf(WIP) best-practices workflow for rare disease
Stars: ✠47 (+261.54%)
Mutual labels: genomics
MTBseq sourceMTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✠26 (+100%)
Mutual labels: genomics
hotspot3d3D hotspot mutation proximity analysis tool
Stars: ✠43 (+230.77%)
Mutual labels: cancer
saffrontreeSaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Stars: ✠17 (+30.77%)
Mutual labels: genomics
calN50Compute N50/NG50 and auN/auNG
Stars: ✠20 (+53.85%)
Mutual labels: genomics
dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
Stars: ✠47 (+261.54%)
Mutual labels: genomics
wrangling-genomicsData Wrangling and Processing for Genomics
Stars: ✠49 (+276.92%)
Mutual labels: genomics
catchA package for designing compact and comprehensive capture probe sets.
Stars: ✠55 (+323.08%)
Mutual labels: genomics
simplesamSimple pure Python SAM parser and objects for working with SAM records
Stars: ✠50 (+284.62%)
Mutual labels: genomics
echtvarecht rapid variant annotation and filtering
Stars: ✠72 (+453.85%)
Mutual labels: genomics