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TorchioMedical image preprocessing and augmentation toolkit for deep learning
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GansegFramework for medical image segmentation using deep neural networks
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DipyDIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Stars: ✭ 417 (+672.22%)
Robot Surgery SegmentationWining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
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Medical TransformerPytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation"
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Efficient Segmentation NetworksLightweight models for real-time semantic segmentationon PyTorch (include SQNet, LinkNet, SegNet, UNet, ENet, ERFNet, EDANet, ESPNet, ESPNetv2, LEDNet, ESNet, FSSNet, CGNet, DABNet, Fast-SCNN, ContextNet, FPENet, etc.)
Stars: ✭ 579 (+972.22%)
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Multiclass Semantic Segmentation CamvidTensorflow 2 implementation of complete pipeline for multiclass image semantic segmentation using UNet, SegNet and FCN32 architectures on Cambridge-driving Labeled Video Database (CamVid) dataset.
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SlicerMulti-platform, free open source software for visualization and image computing.
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MONAILabelMONAI Label is an intelligent open source image labeling and learning tool.
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Vnet TensorflowTensorflow implementation of the V-Net architecture for medical imaging segmentation.
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Niftynet[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
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medSegMedical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架
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Kiu Net PytorchOfficial Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)
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FCN-CTSCANA small TensorFlow project created to test some machine learning problems
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AttentionGatedVNet3DAttention Gated VNet3D Model for KiTS19——2019 Kidney Tumor Segmentation Challenge
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CaerHigh-performance Vision library in Python. Scale your research, not boilerplate.
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Pytorch ToolbeltPyTorch extensions for fast R&D prototyping and Kaggle farming
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Segmentation modelsSegmentation models with pretrained backbones. Keras and TensorFlow Keras.
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HyperdensenetThis repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
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FusionsegVideo Object Segmentation
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Keras UnetHelper package with multiple U-Net implementations in Keras as well as useful utility tools helpful when working with image semantic segmentation tasks. This library and underlying tools come from multiple projects I performed working on semantic segmentation tasks
Stars: ✭ 196 (+262.96%)
HyperDenseNet pytorchPytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation
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XNetCNN implementation for medical X-Ray image segmentation
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U NetU-Net: Convolutional Networks for Biomedical Image Segmentation
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MedicalzoopytorchA pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
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Quicknat pytorchPyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
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Data Science Bowl 2018End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle
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LivianetThis repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
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MiscnnA framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
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Segment OpenSegment Source Distribution
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subpixel-embedding-segmentationPyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)
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BrainyBrainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.
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MedicaldetectiontoolkitThe Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
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acdc segmenterPublic code for our submission to the 2017 ACDC Cardiac Segmentation challenge
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covid19.MIScnnRobust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
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