2. mincewww.cs.cmu.edu/~ckingsf/software/mince/
4. squidSQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
6. scallopScallop is a reference-based transcriptome assembler for RNA-seq
7. kouramiKourami: Graph-guided assembly for HLA alleles
8. splitsbtNo description, website, or topics provided.