13 open source projects by arq5x

a toolkit for working with Oxford nanopore data

lumpy: a general probabilistic framework for structural variant discovery

A powerful toolset for genome arithmetic.

Basic, no assumptions, multi-pileup

bedtools - the swiss army knife for genome arithmetic

a lightweight db framework for exploring genetic variation.

No description, website, or topics provided.

A fast Python library for VCF files leveraging Cython for speed.

Various scripts and recipes for working with nanopore data

A Python interface to the BEDTools API using Cython

BITS: Binary Interval Search

Useful FILe and stream Operations