5 open source projects by biocore-ntnu

Performant Pythonic GenomicRanges

The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.

Ultraperformant reimplementation of SICER

Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

Report reverse and ambiguous strand SNPs in GWAS data