1. SourmashQuickly search, compare, and analyze genomic and metagenomic data sets.
2. Screeda simple read-only sequence database, designed for short reads
3. Elvers(formerly eelpond) an automated RNA-Seq workflow system
4. KhmerIn-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
5. dib-MMETSPCode to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
8. charcoalRemove contaminated contigs from genomes using k-mers and taxonomies.
9. 2016-pycon-tutorialMaterials for "Creating, building, testing, and documenting a Python project - a hands-on HOWTO - PyCon 2016"