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Top 53 dna open source projects

Official git repository for Biopython (originally converted from CVS)

✭ 2,936

python HTML c Parrot Roff Nu bioinformatics genomics dna protein-structure protein biopython phylogenetics sequence-alignment

A Java API for high-throughput sequencing data (HTS) formats.

✭ 220

java genomics sequencing ngs vcf sam dna

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

✭ 2,404

python C++shell Starlark Dockerfile deep-learning machine-learning tensorflow bioinformatics science genomics sequencing ngs dna genome deep-neural-network deepvariant

De novo assembly from Oxford Nanopore reads.

✭ 188

assembly sequencing dna

Pyrosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

✭ 116

jupyter-notebook dna

UGENE is free open-source cross-platform bioinformatics software

✭ 112

cpp cross-platform workflow bioinformatics qt5 pipeline science sequencing ngs dna

A collection of scripts and notes related to genomics and bioinformatics

✭ 101

r workflow bioinformatics science genomics sequencing vcf dna

ABRA2

✭ 65

Analysis pipelines for sequencing data

✭ 43

shell bioinformatics analysis pipeline genomics sequencing dna

Official code repository for GATK versions 4 and up

✭ 1,002

java spark bioinformatics science genomics sequencing ngs dna genome

Predicting Future Influenza Virus Sequences with Machine Learning

✭ 20

python machine-learning scikit-learn dna

😴 📂 Create and Query a Local Copy of GenBank in R

✭ 22

r rstats r-package sequence dna

Data intensive science for everyone.

✭ 812

python hacktoberfest docker workflow bioinformatics pipeline science genomics workflow-engine sequencing ngs dna

tools for working with genome variation graphs

✭ 710

graph genomics dna

Python and C++ code for reading and writing genomics data.

✭ 657

tensorflow bioinformatics genomics dna

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

✭ 640

python bioinformatics bloom-filter dna

3d engine implementation in DNA code!

✭ 493

3d 3d-engine biology dna

16,432 Free Yara rules created by

✭ 324

cluster malware-analysis yara dna threat

Efficient pythonic random access to fasta subsequences

✭ 307

python bioinformatics genomics indexing dna

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

✭ 257

julia bioinformatics deprecated genomics biology dna

A fast 23andMe genome text file parser, now superseded by arv

✭ 64

python C++CMake Makefile shell bioinformatics snps genomics dna snpedia 23andme health-report

NexusTK DAT Object Viewer

✭ 18

java kotlin dat dna dsc pal cmp epf frm tbl

awesome-genetics

A curated list of awesome bioinformatics software.

✭ 60

bioinformatics genomics genetics health dna ancestry snpedia 23andme geneology consumer-dna-test

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

✭ 99

typescript javascript Gnuplot visualization reactjs synthetic-biology vector dna igem plasmid

Fast and flexible ORF finder

✭ 27

python shell bioinformatics dna protein orf-detection orf-finder codon-tables extract-orfs orf-search

A package for designing compact and comprehensive capture probe sets.

✭ 55

python science bioinformatics genomics genome ngs sequencing metagenomics dna viral covid-19

A python wrapper for the benchling api

✭ 39

python CSS Makefile HTML Batchfile dna api-wrapper dna-sequences

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

✭ 35

c perl Makefile compression dna file-format protein rna fasta fastq

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

✭ 64

C++perl python CMake Makefile Batchfile shell dna cobs index k-mers

Precision HLA typing from next-generation sequencing data

✭ 28

Nextflow python HTML Dockerfile workflow pipeline dna rna immunology hla optitype hla-typing personalized-medicine nf-core

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

visualize-dna-sequences

Visualizing DNA Sequences via Javascript

✭ 51

javascript HTML CSS visualization html bootstrap html5 canvas visual bootstrap4 dna sequence visualizing visualizing-dna-sequences

minimalistic nucleic acid folding

✭ 39

python Makefile dna rna folding rna-structure-prediction structure-prediction nucleic-acids energy-functions dna-structure-prediction

A Go package for engineering organisms.

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

✭ 106

python TeX workflow bioinformatics command-line biology dna protein phylogenetics alignment

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

✭ 52

javascript Jupyter Notebook python visualization bioinformatics sequencing liftover dna protein alignment fasta fluent ddv msa fasta-sequences bioinformatics-tool chain-alignment fluentdna

♥ Essential Functions for DNA Manipulation

✭ 15

c C++bioinformatics dna simd-optimizations

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

✭ 52

C++c shell M4 javascript Cuda bioinformatics gpu high-performance cuda nvidia dna high-performance-computing dna-sequences ncbi-blast blastn dna-alignment

Binomica Public Repository for Biological Parts

✭ 21

genetics biology dna parts dna-sequences biotechnology

A package for designing activity-informed nucleic acid diagnostics for viruses.

✭ 16

python Dockerfile science bioinformatics genomics dna diagnostics viral

tools for reading, writing, merging, and remapping SNPs

✭ 57

python bioinformatics snps vcf dna chromosomes

Numerical Encoding for Human Genetic Variants

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

✭ 59

python TeX Modula-3 dna hacktoberfest atomistic-simulations md martini carbohydrates coarse-graining polymers macromolecules

Ultrafast sequence typing and gene detection from NGS raw reads

✭ 15

C++c javascript HTML CMake r genomics ngs computational-biology databases dna genes mlst kmer ngs-analysis cgmlst

A fast 23andMe DNA parser and inferrer for Python

✭ 98

C++python c shell bioinformatics snps genome dna snpedia 23andme

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

✭ 35

python shell Dockerfile docker copy simulation dna number tumour variation circulating

DNA-Sequence-Machine-learning

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

✭ 25

python machine-learning genome dna

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

✭ 22

python Jupyter Notebook lists list bioinformatics genomics dna rna protein-sequences bioinformatics-analysis bioinformatics-scripts

A Framework for Coalescent Simulation in R

✭ 21

r C++simulation evolution popgen dna rstats coalescent

waka waka

✭ 15

python game dna pacman protein rna amino-acids

1-53 of 53 dna projects