All Git Users → fiji

13 open source projects by fiji

[ Open user page on Github ]

1. Fiji plugins

✭ 6

java

2. Fiji

A "batteries-included" distribution of ImageJ 🔋

✭ 424

shell

3. Colocalisation Analysis

Fiji's plugin for colocalization analysis

✭ 18

java

4. Trainable Segmentation

Fiji library to perform image segmentation based on the Weka learning schemes

✭ 73

java

5. TrackMate

TrackMate is your buddy for your everyday tracking.

✭ 82

java matlab image-analysis fiji-plugin single-particle-tracking

6. fiji.github.io

Fiji website

✭ 32

HTML

7. register virtual stack slices

Fiji package for registering and transforming arbitrarily large sequences of images

✭ 13

java shell

8. Stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.

✭ 67

java

9. 3D Viewer

fiji.sc/3d_viewer

✭ 14

java python

10. cookbook

Plugins collated for the Fiji Cookbook

✭ 20

java ImageJ Macro

11. microscope-image-quality

TensorFlow-based classifier for microscope image focus quality.

✭ 14

java

12. SPIM Registration

Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher

✭ 23

java

13. bUnwarpJ

ImageJ/Fiji plugin for consistent elastic registration of 2D images

✭ 22

java

1-13 of 13 user projects