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All Programming Languages → ImageJ Macro

Top 14 ImageJ Macro open source projects

BIRL: Benchmark on Image Registration methods with Landmark validations

2. imagej macros and scripts

ImageJ macros and scripts written at the imaging facility MRI

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ImageJ Macro java python Jupyter Notebook groovy imagej fiji imagej-plugins jython image-analysis-workflows bioimage-analysis fiji-macro toolsets imagej-macros imagej-macro-scripts

🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ

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java ImageJ Macro python groovy javascript ruby imagej imagej2 scripts-collection scientific-workflows image-analysis microscopy jython beanshell ijm

No description, website, or topics provided.

✭ 20

java python Jupyter Notebook matlab ImageJ Macro shell

Multi-modal Image Registration And Connectivity anaLysis

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python shell ImageJ Macro network neuroscience mri connectivity neuroimaging image-segmentation brain image-registration biomedical clarity atlases

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

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Jupyter Notebook python matlab Batchfile Dockerfile ImageJ Macro open-source workflow machine-learning automation python-script image-processing zen acquisition image-analysis microscopy imaging zen-blue oad

Plugins collated for the Fiji Cookbook

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java ImageJ Macro

Deep learning pipeline for segmentation of fluorescent labels in microscopy images

✭ 13

Jupyter Notebook python ImageJ Macro

The NeuroMorph analysis and visualization toolkit

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python ImageJ Macro visualization blender morphology mesh neuroimaging measurements 3d-models

10. ImageJ-Tutorial

Supplementary for my ImageJ Tutorial

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ImageJ Macro matlab

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

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matlab c Smarty M ImageJ Macro PHP calcium-imaging motion-correction animal-tracking miniscope-imaging signal-extraction

12. HAM10000 dataset

Tools for workup of the HAM10000 dataset

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python Jupyter Notebook ImageJ Macro machine-learning dataset neural-networks dermatology diagnoses skin-cancer annotate-images

13. microscopeimagequality

No description, website, or topics provided.

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python ImageJ Macro java

Threshold independent detection and localization of diffraction-limited spots.

✭ 23

python shell ImageJ Macro deep-learning publication blob-detection diffraction-limited-spots spot-detection

1-14 of 14 ImageJ Macro projects