24 open source projects by hammerlab

Interactive in-browser track viewer

Scripts for generating Grafana dashboards for monitoring Spark jobs

Live-updating Spark UI built with Meteor

Library of Stan Models for Survival Analysis

Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly

Microscopy Image Cytometry Toolkit

Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)

Keep Track of Experimental Workflows

A VCF parser and variant record model in JavaScript.

The Sane OCaml String API

low-level helpers for Apache Spark libraries and tests

Probabilistic HLA typing

python convenience functions for working with Stan models (via pystan)

Literature mining for T cell relations

Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)

The simple, fast, visual testing framework for web applications.

Variant Caller Analysis Dashboard and Data Management System

Generate Shell Phrases In OCaml

Improved event handling and testing for the HTML5 canvas

Load genomic BAM files using Apache Spark

Scripts for parsing / making sense of yarn logs

Deploy dask-distributed on google container engine using kubernetes

Utilities for writing tests that use Apache Spark.

Utilities for analyzing mutations and neoepitopes in patient cohorts