12 open source projects by marbl

A fast approximate aligner for long DNA sequences

A metagenomic and isolate assembly and analysis pipeline built with AMOS

MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities

k-mer based assembly evaluation

A single molecule sequence assembler for genomes large and small.

Interactively explore metagenomes and more from a web browser.

Fast genome and metagenome distance estimation using MinHash

SALSA: A tool to scaffold long read assemblies with Hi-C data

No description, website, or topics provided.

The complete sequence of a human genome

Long read / genome alignment software

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…