All Categories → No Category → long-read

Top 6 long-read open source projects

SALSA: A tool to scaffold long read assemblies with Hi-C data

✭ 139

python C++scaffold long-read hic

dysgu-SV is a collection of tools for calling structural variants using short or long reads

✭ 47

c cython C++python Jupyter Notebook shell Dockerfile bioinformatics genomics long-read variant-calling structural-variation paired-end

A Python library to visualize and analyze long-read transcriptomes

✭ 35

Jupyter Notebook python Roff bioinformatics long-read pacbio transcriptome oxford-nanopore pacbio-iso-seq

Minor Variant Calling and Phasing Tools

✭ 15

statistics next-generation-sequencing haplotypes long-read pacbio minor-variant phasing drug-resistance

BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper

✭ 44

C++c python Cuda Makefile shell matrix-multiplication long-read read-aligners spgemm genome-alignment overlapper pacbio-aligner longread-aligner

Suite of tools for use in genome assembly and consensus. Work in progress.

✭ 32

go assembly long-read genome-assembly genome-scaffolding genome-mapping

1-6 of 6 long-read projects