All Git Users → raphael-group

6 open source projects by raphael-group

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Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.

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python java matlab shell

Probabilistic Alignment of Spatial Transcriptomics Experiments

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A Weighted Exact Test for Mutually Exclusive Mutations in Cancer

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python c shell HTML fortran

Framework for Metastatic And Clonal History INtegrative Analysis

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Jupyter Notebook C++TeX shell python CMake r sequencing migration phylogeny metastasis comigration polyclonal reseeding monoclonal

A web application from the Raphael Lab for mutation annotation and genome interpretation.

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javascript HTML python CSS ruby shell

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

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python awk shell

1-6 of 6 user projects