ome / Bioformats
Licence: gpl-2.0
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
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Bio-Formats
Bio-Formats is a standalone Java library for reading and writing life sciences
image file formats. It is capable of parsing both pixels and metadata for a
large number of formats, as well as writing to several formats.
If you are having an issue with Bio-Formats and need support, please see the
support page.
Purpose
Bio-Formats' primary purpose is to convert proprietary microscopy data into
an open standard called the OME data model, particularly into the OME-TIFF
file format. See About Bio-Formats
for further information.
Supported formats
Bio-Formats supports more than a hundred file
formats.
For users
Many software packages
use Bio-Formats to read and write microscopy formats.
For developers
You can use Bio-Formats to easily support these formats in your software.
More information
For more information, see the Bio-Formats web
site.
Pull request testing
We welcome pull requests from anyone, but ask that you please verify the
following before submitting a pull request:
- verify that the branch merges cleanly into
develop
- verify that the branch compiles with the
clean jars tools
Ant targets
- verify that the branch compiles using Maven
- verify that the branch does not use syntax or API specific to Java 1.8+
- run the unit tests (
ant test
) and correct any failures
- test at least one file in each affected format, using the
showinf
command
- internal developers only: run the data
tests
against directories corresponding to the affected format(s)
- make sure that your commits contain the correct authorship information and,
if necessary, a signed-off-by line
- make sure that the commit messages or pull request comment contains
sufficient information for the reviewer(s) to understand what problem was
fixed and how to test it
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for each open source project belongs to its rightful owner.
If you wish to add or remove any projects, please contact us at
[email protected].