ScipipeRobust, flexible and resource-efficient pipelines using Go and the commandline
Stars: β 826 (-87.85%)
Mutual labels: pipeline, workflow
bistroA library to build and execute typed scientific workflows
Stars: β 43 (-99.37%)
Mutual labels: workflow, pipeline
Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: β 170 (-97.5%)
Mutual labels: pipeline, workflow
TargetsFunction-oriented Make-like declarative workflows for R
Stars: β 293 (-95.69%)
Mutual labels: pipeline, workflow
Grunt Drupal TasksGrunt-based build and testing tasks for Drupal
Stars: β 125 (-98.16%)
Mutual labels: build-automation, workflow
GalaxyData intensive science for everyone.
Stars: β 812 (-88.06%)
Mutual labels: pipeline, workflow
VistrailsVisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Stars: β 94 (-98.62%)
Mutual labels: pipeline, workflow
CookiecutterDEPRECIATED! Please use nf-core/tools instead
Stars: β 18 (-99.74%)
Mutual labels: pipeline, workflow
cli-property-managerUse this Property Manager CLI to automate Akamai property changes and deployments across many environments.
Stars: β 22 (-99.68%)
Mutual labels: workflow, pipeline
BatchflowBatchFlow helps you conveniently work with random or sequential batches of your data and define data processing and machine learning workflows even for datasets that do not fit into memory.
Stars: β 156 (-97.71%)
Mutual labels: pipeline, workflow
PipelinePipeline is a package to build multi-staged concurrent workflows with a centralized logging output.
Stars: β 433 (-93.63%)
Mutual labels: pipeline, workflow
SarekDetect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Stars: β 124 (-98.18%)
Mutual labels: pipeline, workflow
Baumeisterπ· The aim of this project is to help you to build your things. From Bootstrap themes over static websites to single page applications.
Stars: β 171 (-97.49%)
Mutual labels: build-automation, workflow
UgeneUGENE is free open-source cross-platform bioinformatics software
Stars: β 112 (-98.35%)
Mutual labels: pipeline, workflow
unity-build-pipelineCustom BASH script for build, archive, export and upload APK and IPA to server with Telegram notification
Stars: β 59 (-99.13%)
Mutual labels: pipeline, build-automation
MachineMachine is a workflow/pipeline library for processing data
Stars: β 78 (-98.85%)
Mutual labels: pipeline, workflow
DrakeAn R-focused pipeline toolkit for reproducibility and high-performance computing
Stars: β 1,301 (-80.87%)
Mutual labels: pipeline, workflow
DNAscanDNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
Stars: β 36 (-99.47%)
Mutual labels: workflow, pipeline
RnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Stars: β 305 (-95.52%)
Mutual labels: pipeline, workflow