fermikitDe novo assembly based variant calling pipeline for Illumina short reads
Stars: ✭ 98 (+24.05%)
Mutual labels: bioinformatics, variant-calling
gencoreGenerate duplex/single consensus reads to reduce sequencing noises and remove duplications
Stars: ✭ 91 (+15.19%)
Mutual labels: bioinformatics, consensus
tiptoftPredict plasmids from uncorrected long read data
Stars: ✭ 27 (-65.82%)
Mutual labels: bioinformatics, pacbio
dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
Stars: ✭ 47 (-40.51%)
Mutual labels: bioinformatics, variant-calling
ivariVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Stars: ✭ 68 (-13.92%)
Mutual labels: variant-calling
SVCollectorMethod to optimally select samples for validation and resequencing
Stars: ✭ 20 (-74.68%)
Mutual labels: bioinformatics
staramrScans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Stars: ✭ 52 (-34.18%)
Mutual labels: bioinformatics
GenomicDataCommonsProvide R access to the NCI Genomic Data Commons portal.
Stars: ✭ 64 (-18.99%)
Mutual labels: bioinformatics
SumStatsRehabGWAS summary statistics files QC tool
Stars: ✭ 19 (-75.95%)
Mutual labels: bioinformatics
CATTAn ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Stars: ✭ 17 (-78.48%)
Mutual labels: bioinformatics
epaxosA pluggable implementation of the Egalitarian Paxos Consensus Protocol
Stars: ✭ 39 (-50.63%)
Mutual labels: consensus
biskitA Python platform for Structural Bioinformatics
Stars: ✭ 47 (-40.51%)
Mutual labels: bioinformatics
bio toolsUseful bioinformatic scripts
Stars: ✭ 35 (-55.7%)
Mutual labels: bioinformatics
mulledMulled - Automatized Containerized Software Repository
Stars: ✭ 49 (-37.97%)
Mutual labels: bioinformatics
dna-sculpture3D printed sculpture of a DNA molecule, showing my own genome
Stars: ✭ 22 (-72.15%)
Mutual labels: bioinformatics
ngstoolsMy own tools code for NGS data analysis (Next Generation Sequencing)
Stars: ✭ 28 (-64.56%)
Mutual labels: bioinformatics
poa-network-consensus-contractsMain repository for POADAO consensus. Includes contracts for Initial Ceremony, Governance, Management of Validators
Stars: ✭ 68 (-13.92%)
Mutual labels: consensus
orfipyFast and flexible ORF finder
Stars: ✭ 27 (-65.82%)
Mutual labels: bioinformatics