seurat-wrappersCommunity-provided extensions to Seurat
Stars: ✭ 169 (+369.44%)
Mutual labels: single-cell-analysis
PrimerMinerR mased batch sequence downloader, with primer development and in silico evaluation capabilities
Stars: ✭ 27 (-25%)
Mutual labels: bioinformatics
protwisProtwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).
Stars: ✭ 20 (-44.44%)
Mutual labels: bioinformatics
faster lmm dA faster lmm for GWAS. Supports GPU backend.
Stars: ✭ 12 (-66.67%)
Mutual labels: bioinformatics
PHATPathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Stars: ✭ 17 (-52.78%)
Mutual labels: bioinformatics
TeamTeriGenomics using open source tools, running on GCP or AWS
Stars: ✭ 30 (-16.67%)
Mutual labels: bioinformatics
immunarch🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Stars: ✭ 204 (+466.67%)
Mutual labels: single-cell-analysis
GRAFIMOGRAph-based Finding of Individual Motif Occurrences
Stars: ✭ 22 (-38.89%)
Mutual labels: bioinformatics
wgs2ncbiToolkit for preparing genomes for submission to NCBI
Stars: ✭ 25 (-30.56%)
Mutual labels: bioinformatics
BridgeDbThe BridgeDb Library source code
Stars: ✭ 22 (-38.89%)
Mutual labels: bioinformatics
ensembl-comparaThe Ensembl Compara Perl API and SQL schema
Stars: ✭ 43 (+19.44%)
Mutual labels: bioinformatics
CANDOComputational Analysis of Novel Drug Opportunities
Stars: ✭ 27 (-25%)
Mutual labels: bioinformatics
gnparserGNparser normalises scientific names and extracts their semantic elements.
Stars: ✭ 26 (-27.78%)
Mutual labels: bioinformatics
jgi-queryA simple command-line tool to download data from Joint Genome Institute databases
Stars: ✭ 38 (+5.56%)
Mutual labels: bioinformatics
dysgudysgu-SV is a collection of tools for calling structural variants using short or long reads
Stars: ✭ 47 (+30.56%)
Mutual labels: bioinformatics
topometryA comprehensive dimensional reduction framework to recover the latent topology from high-dimensional data.
Stars: ✭ 64 (+77.78%)
Mutual labels: single-cell-analysis
unimapA EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✭ 76 (+111.11%)
Mutual labels: bioinformatics
bindSCBi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
Stars: ✭ 24 (-33.33%)
Mutual labels: single-cell-analysis
awesome-phagesA curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Stars: ✭ 14 (-61.11%)
Mutual labels: bioinformatics
sample-sheetA permissively licensed library designed to replace Illumina's Experiment Manager
Stars: ✭ 42 (+16.67%)
Mutual labels: bioinformatics