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All Projects → stan-dev → cmdstanr

stan-dev / cmdstanr

Licence: other
CmdStanR: the R interface to CmdStan

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r
7636 projects
Stan
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bayesianstanr-packagemcmcvariational-inferencemaximum-likelihoodmarkov-chain-monte-carlo

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CmdStanR

CRAN status Unit tests Codecov test coverage

Overview

CmdStanR is a lightweight interface to Stan for R users (see CmdStanPy for Python).

If you are new to CmdStanR we recommend starting with these vignettes:

Goals

  • A clean interface to Stan services so that CmdStanR can keep up with Stan releases.

  • R code that doesn't interface directly with C++, only calls compiled executables.

  • Modularity: CmdStanR runs Stan's algorithms and lets downstream modules do the analysis.

  • Flexible BSD-3 license.

Installation

Installing the R package

You can install the latest beta release of the cmdstanr R package with

# we recommend running this is a fresh R session or restarting your current session
install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))

This does not install the vignettes, which take a long time to build, but they are always available online at https://mc-stan.org/cmdstanr/articles/.

To instead install the latest development version of the package from GitHub use

# install.packages("remotes")
remotes::install_github("stan-dev/cmdstanr")

Installing CmdStan

If you don't already have CmdStan installed then, in addition to installing the R package, it is also necessary to install CmdStan using CmdStanR's install_cmdstan() function. A suitable C++ toolchain is also required. Instructions are provided in the Getting started with CmdStanR vignette.

Contributing

There is a lot of work still to be done and contributions are very welcome! If you are interested in contributing please comment on an open issue or open a new one if none are applicable.

License

CmdStanR, like CmdStan and the core Stan C++ code, is licensed under the following licenses:

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].