Top 9 maximum-likelihood open source projects

Survival analysis in Python

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

CmdStanR: the R interface to CmdStan

Ancestor character reconstruction and visualisation for rooted phylogenetic trees

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

R package that provides estimation methods for Gravity Models

CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations

Maximum likelihood demultiplexing

Matlab package for learning to specify, compute, and estimate dynamic discrete choice models