All Projects → globalbioticinteractions → Globalbioticinteractions

globalbioticinteractions / Globalbioticinteractions

Licence: gpl-3.0
Global Biotic Interactions provides access to existing species interaction datasets

Programming Languages

java
68154 projects - #9 most used programming language

Projects that are alternatives of or similar to Globalbioticinteractions

hotsub
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Stars: ✭ 29 (-59.15%)
Mutual labels:  bioinformatics, etl-framework
Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Stars: ✭ 257 (+261.97%)
Mutual labels:  bioinformatics, biology
full spectrum bioinformatics
An open-access bioinformatics text
Stars: ✭ 26 (-63.38%)
Mutual labels:  bioinformatics, biology
Awesome Biology
Curated (meta)list of resources for Biology.
Stars: ✭ 174 (+145.07%)
Mutual labels:  bioinformatics, biology
Python biologist
Python Programming for Biologists
Stars: ✭ 55 (-22.54%)
Mutual labels:  bioinformatics, biology
Deep Rules
Ten Quick Tips for Deep Learning in Biology
Stars: ✭ 179 (+152.11%)
Mutual labels:  bioinformatics, biology
lexicon-mono-seq
DOM Text Based Multiple Sequence Alignment Library
Stars: ✭ 15 (-78.87%)
Mutual labels:  bioinformatics, biology
flexidot
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Stars: ✭ 73 (+2.82%)
Mutual labels:  bioinformatics, biology
Jvarkit
Java utilities for Bioinformatics
Stars: ✭ 313 (+340.85%)
Mutual labels:  bioinformatics, biology
Tdc
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics
Stars: ✭ 291 (+309.86%)
Mutual labels:  bioinformatics, biology
Indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Stars: ✭ 105 (+47.89%)
Mutual labels:  bioinformatics, biology
Ncbi Genome Download
Scripts to download genomes from the NCBI FTP servers
Stars: ✭ 494 (+595.77%)
Mutual labels:  bioinformatics, biology
Riddle
Race and ethnicity Imputation from Disease history with Deep LEarning
Stars: ✭ 91 (+28.17%)
Mutual labels:  bioinformatics, biology
Intermine
A powerful open source data warehouse system
Stars: ✭ 195 (+174.65%)
Mutual labels:  bioinformatics, biology
Biosequences.jl
Biological sequences for the julia language
Stars: ✭ 77 (+8.45%)
Mutual labels:  bioinformatics, biology
Pygeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Stars: ✭ 261 (+267.61%)
Mutual labels:  bioinformatics, biology
Jbrowse
A modern genome browser built with JavaScript and HTML5.
Stars: ✭ 393 (+453.52%)
Mutual labels:  bioinformatics, biology
Metasra Pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Stars: ✭ 33 (-53.52%)
Mutual labels:  bioinformatics, biology
Emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Stars: ✭ 51 (-28.17%)
Mutual labels:  bioinformatics
Lambda
LAMBDA – the Local Aligner for Massive Biological DatA
Stars: ✭ 59 (-16.9%)
Mutual labels:  bioinformatics

Welcome to the Global Biotic Interactions (GloBI)

This mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information .

Build Status Java CI DOI

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

gplv3cc-by-nc

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there's better ways to do this, please let us know.

Note that the project description data, including the texts, logos, images, and/or trademarks, for each open source project belongs to its rightful owner. If you wish to add or remove any projects, please contact us at [email protected].