lexicon-mono-seqDOM Text Based Multiple Sequence Alignment Library
Stars: ✭ 15 (-61.54%)
Mutual labels: alignment, sequence-alignment
mapping-iterative-assemblerConsensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
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Mutual labels: alignment
tracyBasecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Stars: ✭ 73 (+87.18%)
Mutual labels: alignment
arribaFast and accurate gene fusion detection from RNA-Seq data
Stars: ✭ 162 (+315.38%)
Mutual labels: structural-variation
AvxWindowFmIndexA fast, AVX2 accelerated FM index library
Stars: ✭ 20 (-48.72%)
Mutual labels: fm-index
Circle-MapA method for circular DNA detection based on probabilistic mapping of ultrashort reads
Stars: ✭ 45 (+15.38%)
Mutual labels: structural-variation
cacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Stars: ✭ 21 (-46.15%)
Mutual labels: alignment
nightlightNightlight: Astronomic Image Processing
Stars: ✭ 25 (-35.9%)
Mutual labels: alignment
minineedleNeedleman-Wunsch and Smith-Waterman algorithms in python
Stars: ✭ 27 (-30.77%)
Mutual labels: alignment
unicode display widthDisplayed width of UTF-8 strings in Modern C++
Stars: ✭ 30 (-23.08%)
Mutual labels: alignment
SneakySnakeSneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs…
Stars: ✭ 44 (+12.82%)
Mutual labels: sequence-alignment
RDPToolsCollection of commonly used RDP Tools for easy building
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Mutual labels: sequence-alignment
ChromAlignNetDeep neural network for the alignment of GC-MS peaks
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Mutual labels: alignment
seqalign pathingRust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm
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Mutual labels: sequence-alignment
typeorm-factoriesCreate factories for your TypeORM entities. Useful for NestJS applications
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Mutual labels: seeds
simuGsimuG: a general-purpose genome simulator
Stars: ✭ 68 (+74.36%)
Mutual labels: structural-variation
BELLABELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
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Mutual labels: read-aligners
mtcnn tfMTCNN implement by tensorflow. Easy to training and testing.
Stars: ✭ 41 (+5.13%)
Mutual labels: alignment
SpatialAlignmentHelpful components for aligning and keeping virtual objects aligned with the physical world.
Stars: ✭ 29 (-25.64%)
Mutual labels: alignment
