indigoIndigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Stars: ✭ 26 (-64.38%)
Mutual labels: sequencing, alignment, crispr-analysis, variant-calling, pcr, crispr-cas9, sanger-chromatograms, indel-discovery, sanger-sequencing, pcr-products
CRISPRCasTyperCCTyper: Automatic detection and subtyping of CRISPR-Cas operons
Stars: ✭ 43 (-41.1%)
Mutual labels: crispr-analysis, crispr-cas9
HLAxHLA: Fast and accurate HLA typing from short read sequence data
Stars: ✭ 84 (+15.07%)
Mutual labels: sequencing, variant-calling
diceyIn-silico PCR and variant primer design
Stars: ✭ 24 (-67.12%)
Mutual labels: pcr, sanger-sequencing
FluentDNAFluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Stars: ✭ 52 (-28.77%)
Mutual labels: sequencing, alignment
pblatparallelized blat with multi-threads support
Stars: ✭ 34 (-53.42%)
Mutual labels: sequencing, alignment
cacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Stars: ✭ 21 (-71.23%)
Mutual labels: sequencing, alignment
ShastaDe novo assembly from Oxford Nanopore reads.
Stars: ✭ 188 (+157.53%)
Mutual labels: sequencing
THINGSvisionPython package for extracting and analyzing image representations from state-of-the-art neural networks for computer vision
Stars: ✭ 106 (+45.21%)
Mutual labels: alignment
RoaryRapid large-scale prokaryote pan genome analysis
Stars: ✭ 176 (+141.1%)
Mutual labels: sequencing
AfterqcAutomatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Stars: ✭ 169 (+131.51%)
Mutual labels: sequencing
DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stars: ✭ 2,404 (+3193.15%)
Mutual labels: sequencing
cerebraA tool for fast and accurate summarizing of variant calling format (VCF) files
Stars: ✭ 55 (-24.66%)
Mutual labels: variant-calling
JQCollectionViewAlignLayoutA custom layout object based on flow layout. Added supports for horizontal, vertical alignment and RTL direction of collection view items.(available for both UICollectionView and NSCollectionView)
Stars: ✭ 69 (-5.48%)
Mutual labels: alignment
iceSynthego ICE - Inference of CRISPR Editing software
Stars: ✭ 55 (-24.66%)
Mutual labels: crispr-analysis
SnapatacAnalysis Pipeline for Single Cell ATAC-seq
Stars: ✭ 183 (+150.68%)
Mutual labels: sequencing
GenomicsDBHighly performant data storage in C++ for importing, querying and transforming variant data with C/C++/Java/Spark bindings. Used in gatk4.
Stars: ✭ 77 (+5.48%)
Mutual labels: variant-calling
Rnaseq WorkflowA repository for setting up a RNAseq workflow
Stars: ✭ 170 (+132.88%)
Mutual labels: sequencing
HtsjdkA Java API for high-throughput sequencing data (HTS) formats.
Stars: ✭ 220 (+201.37%)
Mutual labels: sequencing
metacoderParsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Stars: ✭ 120 (+64.38%)
Mutual labels: pcr
